Basic Information

Insect: Syrphus vitripennis
Gene Symbol: -
Assembly: GCA_958431115.1
Location: OY288111.1:1164184-1165950[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.3e-09 9.8e-07 29.4 0.0 5 43 15 53 12 55 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.3e-09	9.8e-07	29.4	0.0	5	43	15	53	12	55	0.88

Sequence Information

Coding Sequence: ATGGCACAGCAAAATAAACGGGCAAGATGGAACGAAGTCGACATTGAAAATGCAATACAATCTGTAAAAAGAGGGTTATTGTCTCAACGCGAAGCCTCAGCGCGCTTTAATGTTCCTAGAAGGACTCTCAGGAACCACATAAAGAGcggttcaacaaaaaaaaaattgggtcgCCCACCCACATTCACGGCCGAACAGGAAAAGGATTTATGTAGCAGGATTGTGAGATTGGCTCAAGTTGGTATGCCACTTACACAAAAAGTGGTAAGGCATCAAGTCGCAGTATTTTGTGAGGCCAACAACATCGCCAACAGTTTCAGCAGGCCGGGAAATCTGGCAGGAAGAAAGTGGATGAACTTGTTTATGAAGCGAAACCCAGAGTTGTCGATTAGTAAGCCCCATTCCATGAACCCCGCTAGGgcccaaaaattaaataagcaaATCGTGGCTGACCACTTCATAAAACTGGAGGTCCTGCTAGATAGATTAAACATAAGGTACAGACCTGAATGCATCTACAACATGGATGAAAAAGGCTGCAGAATAAATTTGCATCACCAAAAAAACGTCTTGGCTCTTAAAGGGTCAAAAAGAGTTCATCAAATATCAAATGAACATGCGGAAAGTGTCACCGTTGTAGGCTGCGTCAACGCCATAGGAACTGCAATTCCACCCATGGTCATCTTCAAAGGCATAAGGCAAAAACCGGAGTTTTTGGATAATCTCCCACTCGGGTCCGTAGTGAAGATGACCCCAAAAGGCTATATGAACCACTCCGCTTTTGTGGATTTTGTAACTCATTTGAGCAAGTTCAAAGCTAACGGACCTTGCCTCTTAGTTTTTGACGGAGCTGCGTGTCATTTGGATTACAGTATTGTGGACGAAgcagaaaaacatgaaataacGCTCTATTGTCTTCCATCAAACACCACGCACGAGCTCCAACCTCTGGATAAAGCCGTGTACCGATCATTCGAGCATCACTGGGATCAAGAAGTATTGAAGTTTACTTCAAAGTTTCCAGAAAGGAAACTTAATAAAACAAGCTTCAATGTTATATTATCAAGTGTTTGGTTAAAATGCATGACATATGACAACATTACTTCAGGATTTAGAGCGACAGGATTGTATCCTTTTGATCCTGAAGCGATTCCAGAGATAGCATTCGCTCCGTCAGCACTCTCCGAGTTACAATTCCCGACAAATTTGGAAAACAGTGTTCCAAGCACATCTGGTACACAAACGCAGCAGCCTCACATTATACCGGACCTCTACAACTCAGATGATGACTCTGACAATGCTCCACTTTCAACATTGGTAGCTCAAACATCGGAGGAAGAGGAGCGtaaacaatcaaataaaaaatctccATTTCAAAAACTGCTTCCCACAACTAAAACTAAGGTCAATCGAATAACAAATCGAAAAAAGGCCTTGAACTTCAAAGGCCAAGAAGTTACAAAACATCTCTTCGAAGAGAAACAAAAGGAACTGGATACAGCTTCTCAACCCAAACCATCAACATCCAAAAGAGAATCTAAACGAAAGGAAGGGACAGGAGCGTGGTATTGTCACGCCTGTAAAATTGATAGCATGGAAGACATGAGGCAATGCCAAGCTTGCGGCGGCGCTTGGTATCATGAACTATGCGTCGGGTTGACTGAAGAAGACGAGGCTTTTGAATGTCCAGGTGGATGTGTTTAA
Protein Sequence: MAQQNKRARWNEVDIENAIQSVKRGLLSQREASARFNVPRRTLRNHIKSGSTKKKLGRPPTFTAEQEKDLCSRIVRLAQVGMPLTQKVVRHQVAVFCEANNIANSFSRPGNLAGRKWMNLFMKRNPELSISKPHSMNPARAQKLNKQIVADHFIKLEVLLDRLNIRYRPECIYNMDEKGCRINLHHQKNVLALKGSKRVHQISNEHAESVTVVGCVNAIGTAIPPMVIFKGIRQKPEFLDNLPLGSVVKMTPKGYMNHSAFVDFVTHLSKFKANGPCLLVFDGAACHLDYSIVDEAEKHEITLYCLPSNTTHELQPLDKAVYRSFEHHWDQEVLKFTSKFPERKLNKTSFNVILSSVWLKCMTYDNITSGFRATGLYPFDPEAIPEIAFAPSALSELQFPTNLENSVPSTSGTQTQQPHIIPDLYNSDDDSDNAPLSTLVAQTSEEEERKQSNKKSPFQKLLPTTKTKVNRITNRKKALNFKGQEVTKHLFEEKQKELDTASQPKPSTSKRESKRKEGTGAWYCHACKIDSMEDMRQCQACGGAWYHELCVGLTEEDEAFECPGGCV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01396424; iTF_00188007; iTF_01396423; iTF_00188008; iTF_00188009; iTF_01396425; iTF_00188010; iTF_01396426; iTF_00188011; iTF_00188012; iTF_00188013; iTF_00188014; iTF_00188015; iTF_01396436; iTF_01396437; iTF_01396438;
90% Identity: iTF_01396424; iTF_00188007; iTF_01396423; iTF_00188008; iTF_00188009; iTF_01396425; iTF_00188010; iTF_01396426; iTF_00188011; iTF_00188012; iTF_00188013; iTF_00188014; iTF_00188015; iTF_01396436; iTF_01396437; iTF_01396438;
80% Identity: -