Svit031845.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- Clic
- Assembly
- GCA_958431115.1
- Location
- OY288110.1:76513241-76519447[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.3e-13 5.6e-10 39.8 0.0 2 39 124 162 123 167 0.92 2 3 2.8 2.2e+03 -0.5 0.0 27 37 196 206 185 212 0.84 3 3 3.4e-10 2.7e-07 31.3 0.0 8 39 240 271 235 276 0.90
Sequence Information
- Coding Sequence
- ATGAAAATCATCGAAGTTTCTGAATCCGAAGAAAACTCCATACCACCTAAACAATTGGATCAACTCCGTTTGCCAGTAATGAAAGTTTGTTCAGGAAGTGATCAATACATTATATACGAACTAAAAAGTGACAGTCAACCGGCTCATAAAAATCCTAAAGAACCCCCTCCAGACTGTTCTAATCCGAAAGAACATAAAACTTCCGATTCCATCATTTCCAGCAGTGCTACAAAAGTATTTGTAAATCCTGGACCATACACAATCAGTTTTCAAATACCAATTCAGCCAGTTAATGAGATTTATCCAAAATCAAAGCGTGAGTTAGTCAGAAAAAGAAGCATTTTAGCCAAAACAAAGCGCATTTTAGCCCGAGAAAGACTCGCAGAAGCTATTGATGCGGTAGTGAATAAAGACATGACAATTGGTAAAGCTGCAAAAGCCTTTGAAGTGACAAAGAGTACCTTGTGGAAAGAAGTTAACAAACAGACCGACCGTCGAAAAAAGAAAGTCAATGAAAATCTCACTAAGAAGATCGTTGATCGTATCTGTGGCGGTGAATCACTTTCAGCCATTTCAAGATCCTTAAATGTTGCCAAATCAACGATACACGAGCATAAAGTTCGACTTGGACAAGCTGGCAAGCTTCCACCGAATGTAACTTTCAAACCACCTCTAGATAAAACACAGCAAGAAGCTATCAAGAATCGTATAATTGGGGCTTTTCGTGCTGTTCGAGTTAATGGTATGTCTTTGCGTTTAGCATCAGAGTATTTCTCAGTGCCACGATCAACGCTTTGGAAGCACATACAAAGGTTTAAAGCTTCCCAAAAGAAACTAGAAAAAGATGCACCCAAAGAATGTAAGGATACTGAAAAGACTGCGGAAGATGAAAGTAGTAGTAACGAGGAAACTAGTGAAGAAGAAGAGGATAGTACCGAAGCAGATGACAGTCCAGATGAAGTAGCAAATGAAGATGCTTCTGAAGAAATGAATGAAAGTACGTCCGATGTGCAATCTACAACAACAACCGAGACTGACCGACAGGATGACTTTGATTTGCTGGATTTGTCTTCTGCGTCACAGCTTGGTGATCCAAGTGAAGATGGAGACATTTTTAtaggttttgattttgaatctTTTGAAGATTATgcaTCTACCATCGATGGAAGACGTAAGGGAGCTTGTCTTTTTTGTCAAGAATATTTCATGGATTTGTACCTGTTAGCAgaacttaaaacaataagtttaaagGTCACAACAGTTGATATGCAAAAACCTCCACCAGATTTTCGTACGAACTTCGAGGCGACACATCCGCCAATTCTTATTGACAATGGTCTGGCCATTCTGgaaaatgacaaaattgaaaGGCACATCATGAAGAACATCCCCGGTGGATATAATCTCTTCGTTCAGgacAAAGAAGTAGCCACACTGATTGAAAACCtgtattcaaaattgaaattgatgttGGTTAAAAAAGATGAAAGCAAAAACAATTCGTTATTGTCACATTTGAGGAAGATCAACGATCATTTGGCATCACGTGGAACACGTTTTCTAACGGGTGATACTATGTGTTGTTTTGATTGTGAACTGATGCCAAGGTTACAGCATATTCGAGTGGCTGGAAAGTATTTTGTCGATTTTGAAATACCCactCACCTGTCATCCTTGTGGCGTTACATGTATCACATGTACCAATTAGATGCCTTCACGCAATCCTGTCCAGCTGATCAGGATATTATAAATCATTATAAACTACAACAGATGCTCAAAATGAAGAAACACGAGGAACTGGAAACACCTACATTCACAACGTCAATTCCGATTAATGTTTCGGAATAA
- Protein Sequence
- MKIIEVSESEENSIPPKQLDQLRLPVMKVCSGSDQYIIYELKSDSQPAHKNPKEPPPDCSNPKEHKTSDSIISSSATKVFVNPGPYTISFQIPIQPVNEIYPKSKRELVRKRSILAKTKRILARERLAEAIDAVVNKDMTIGKAAKAFEVTKSTLWKEVNKQTDRRKKKVNENLTKKIVDRICGGESLSAISRSLNVAKSTIHEHKVRLGQAGKLPPNVTFKPPLDKTQQEAIKNRIIGAFRAVRVNGMSLRLASEYFSVPRSTLWKHIQRFKASQKKLEKDAPKECKDTEKTAEDESSSNEETSEEEEDSTEADDSPDEVANEDASEEMNESTSDVQSTTTTETDRQDDFDLLDLSSASQLGDPSEDGDIFIGFDFESFEDYASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENDKIERHIMKNIPGGYNLFVQDKEVATLIENLYSKLKLMLVKKDESKNNSLLSHLRKINDHLASRGTRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTHLSSLWRYMYHMYQLDAFTQSCPADQDIINHYKLQQMLKMKKHEELETPTFTTSIPINVSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -