Spip001354.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- nfxl1
- Assembly
- GCA_905187475.1
- Location
- LR994574.1:20175649-20179455[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2 2e+04 -8.1 6.4 15 19 166 170 165 170 0.82 2 21 0.31 3e+03 -1.5 0.4 4 10 201 207 200 207 0.92 3 21 5.9e-08 0.00058 20.0 15.1 1 18 215 231 215 232 0.98 4 21 1.5 1.5e+04 -3.7 1.4 5 10 257 262 257 262 0.93 5 21 0.077 7.6e+02 0.4 18.4 1 19 268 287 268 287 0.90 6 21 1.4 1.4e+04 -3.6 1.8 6 10 312 316 311 316 0.89 7 21 4.7e-09 4.6e-05 23.5 14.8 1 19 322 340 322 340 0.99 8 21 0.013 1.2e+02 2.9 1.9 5 12 364 371 364 371 0.93 9 21 4e-08 0.00039 20.5 10.9 1 19 375 393 375 393 0.96 10 21 0.59 5.7e+03 -2.4 0.6 1 10 402 411 402 411 0.72 11 21 4.9e-08 0.00048 20.2 17.8 1 18 427 444 427 445 0.98 12 21 3.5e-08 0.00034 20.7 13.1 3 19 456 472 448 472 0.85 13 21 3.5e-05 0.35 11.1 7.8 9 18 517 526 515 527 0.89 14 21 0.00066 6.5 7.0 6.1 1 11 539 548 539 549 0.95 15 21 0.33 3.3e+03 -1.6 0.9 6 10 608 612 607 612 0.90 16 21 1.7e-06 0.016 15.3 4.3 1 11 618 628 618 629 0.99 17 21 1.8 1.8e+04 -4.0 0.9 6 18 645 649 644 650 0.49 18 21 0.085 8.4e+02 0.3 15.8 3 18 658 673 657 674 0.91 19 21 2 2e+04 -6.8 3.1 10 13 681 684 680 684 0.68 20 21 8.7e-08 0.00085 19.4 12.7 1 17 725 743 725 745 0.86 21 21 2 2e+04 -4.1 0.9 6 10 775 779 774 779 0.79
Sequence Information
- Coding Sequence
- ATGTCTATACCAAATTTACAAAAGCAAAAAGGTCAAAAACATAATTTAAATGGCACTCACCGAGGAGAAAAACCAAACAATATAACATTGCAAACCTTTCGAGACATTCAAACCAAAAACATGGAACTAGTGAAAAAAATTACAGAGAACTATGAATCTAGTTCTGATGAGGAGGAAATTGATGGAGGAAAAATTCTAGAAAAATTATTTAAAAGCTACAAGGGTGGATTCGAACAGATTCAAAAGACTGCCGCGTTCCTGGAGAATGTACTGCAATCAGGCTCAGCGATATGCCTAATCTGCATTGGATCGATTAAAAGAGTTGATGCCGTCTGGTCTTGCAAATATTGTTATTGTGTTTTTCATCTAACGTGCGTTAAGCGGTGGGCTAACGACAGTATAGCTCTGATTAAAAACAAAGGTGTCGACGAGCAGGAGTACTACAATAACATGGGCCAATTCGTTCCGAAGAAGACAAAAGCCGTCAAGTGGTGTTGTCCACAATGTCGTCGGGACTATTCTCCCGATGAGAGACCAACGGATTATGCGTGTTTCTGCGGGAAGGAAATAAATCCAGTGTGTCAAGAGTGGCTGGTGCCGCATTCATGTGGCGATACTTGTGGGAAGCCACTACAACCGGAGTGTGGGCACAAATGTGTGCTACTTTGTCACCCAGGTCCATGTCCTCCTTGCGCGCAGAATATAGTTACTAGTTGCAAATGCAAAAATTCTCCACCGAAGGTAGTGCGTTGTTTTCAGAAAAGTTGGACGTGTGATAAAAAGTGTACTGAAATTTTGGCGTGTGGGAAGCACAGGTGTGGACACATTTGCCACCCTCCCAAAGAGTGTCCAGGTTGCAGCAAGACCAGTCTTCAGAAGTGCATTTGTGGGAATGATGAAGCTATAAGAAGTTGTTTCCAGCGCGTTTGGCAGTGCAAAAAGGTTTGCAATAAGAAGTATAGCTGTGGACTTCATAGTTGTAAGAAAGTTTGTCATGACGGACCATGTGGAGAGTGTCCACTTAGTCTCCCGAGAACATGTCCATGTGGCAAAACAAAACGGATTGCACCCTGCACTGAAGCGATTGAGACCTGTAACGACACTTGCCATAAGCTACTTTCATGTGGGAAACATTATTGCAATCAGCGTTGTCATAAAGGCGATTGTAGCTTGTGCTCCATTATTACGAAGAAAACCTGCCGCTGTGGTCTGCACCAAAGAGAAGTGCCCTGCTGGAAAACATTTTACTGTGAAACTAAGTGCAAGAGACTTCGGGACTGCGGAAAGCATACTTGCAACAAAAAGTGCTGTGATGGACAGTGTCCTCCATGCGACAAGGTATGTGGAAAACTGTTGTCATGTAAAAAACACAAATGCACATCTGTGTGCCACGATGGTCCTTGTTATCCGTGTAAACTGAAGTCACAAGCAAAGTGCTACTGTGGAAGTACCTCTGTTACAGTACCGTGCGGCAGGGAGCGTAGGACACGTCCAGCTTGCTCAAAATTTTGCAGAACATCCTCTAAGTGTCATCACCTAAACAAGCACAAATGCCACAAGGGTGAGTGCCCACCATGTAATCAGATATGTGGCCTTAAAAATGATAGCTCAAATTGTGGACATAACTGTGAGGCTCGTTGTCACGCCGCAGTTCGAGTTCCTATTAAACAATCTGTCGGGAGTAATATATTTGAATATAAATCGGAGAATCACGAAATTAAATGTTTACCACACCCACGTTGCGAAAAGAAAGTGATGGTGCCTTGTCTCGGGGGTCATGAGATAGCTGAATGGCCGTGTTGGAATTCAAAACCAACATCGTGTCAAAGGTTATGTGGCCGTCAGTTATCATGTGGCAATCATACGTGTGAACTAATTTGCCATTTTGTTTCCGATATCAATGATAAACGTGAACAAGACGGCTGTTCAGCGTGCGGAGAACCATGTCAGCTAGAGCGTACACCAGGTTGTACACATGCGTGCCTAAAGGGTTGCCATCCACCTCCGTGTGAGCCATGTAATATCTTAATAAAAACAAAGTGCCACTGTGGTCTTTCGCAAGTCTTCTACAAGTGTTCAGACTACTATTCGGCTGAAGGTACAGAAGAGGAAATAGCAGCACAACGAGAAAAACTGAAAAGCTGTGGAAATCGTTGTATCAAAACCTACCCATGTGGTCACCGCTGTTCGTCGGTTTGTCATTCAGGCCCATGTCCCAATCCTGAAAACTGTCGGAAGAAATTAAAAATATACTGCGAGTGTAAACGAATTAAATCAGAAATATCCTGTGAAAAGTCACGTTCATGTCCACCAGTTATACCGTGTGACGAAACGTGCGCACTCACCAAAGCAATCATGGAGAAGGCCAAGAACGAAAAATTGGAAAAACTAAAGCAGCAACAAGCGGAACGAGATCGTCTCGAAGTAGAACAATTCGAGAAGAGGTTCGGTAAGCGAAAACACAAAGAACGTAAGGTCGTCGAAACAAAAGTGAAGAAATCCGACTACACGAAAAAGTTGTGGTATGCCGCAACAATTATTTCAGCAACTGCTGCAGCAGTTCTTGCATTTTATTACTACCAGGATGCTGCACATTCTCTCATTGCACCGGTCAATTAA
- Protein Sequence
- MSIPNLQKQKGQKHNLNGTHRGEKPNNITLQTFRDIQTKNMELVKKITENYESSSDEEEIDGGKILEKLFKSYKGGFEQIQKTAAFLENVLQSGSAICLICIGSIKRVDAVWSCKYCYCVFHLTCVKRWANDSIALIKNKGVDEQEYYNNMGQFVPKKTKAVKWCCPQCRRDYSPDERPTDYACFCGKEINPVCQEWLVPHSCGDTCGKPLQPECGHKCVLLCHPGPCPPCAQNIVTSCKCKNSPPKVVRCFQKSWTCDKKCTEILACGKHRCGHICHPPKECPGCSKTSLQKCICGNDEAIRSCFQRVWQCKKVCNKKYSCGLHSCKKVCHDGPCGECPLSLPRTCPCGKTKRIAPCTEAIETCNDTCHKLLSCGKHYCNQRCHKGDCSLCSIITKKTCRCGLHQREVPCWKTFYCETKCKRLRDCGKHTCNKKCCDGQCPPCDKVCGKLLSCKKHKCTSVCHDGPCYPCKLKSQAKCYCGSTSVTVPCGRERRTRPACSKFCRTSSKCHHLNKHKCHKGECPPCNQICGLKNDSSNCGHNCEARCHAAVRVPIKQSVGSNIFEYKSENHEIKCLPHPRCEKKVMVPCLGGHEIAEWPCWNSKPTSCQRLCGRQLSCGNHTCELICHFVSDINDKREQDGCSACGEPCQLERTPGCTHACLKGCHPPPCEPCNILIKTKCHCGLSQVFYKCSDYYSAEGTEEEIAAQREKLKSCGNRCIKTYPCGHRCSSVCHSGPCPNPENCRKKLKIYCECKRIKSEISCEKSRSCPPVIPCDETCALTKAIMEKAKNEKLEKLKQQQAERDRLEVEQFEKRFGKRKHKERKVVETKVKKSDYTKKLWYAATIISATAAAVLAFYYYQDAAHSLIAPVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -