Spip013476.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- ush
- Assembly
- GCA_905187475.1
- Location
- LR994571.1:91002767-91008467[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.01 1.1 10.0 0.0 1 20 212 231 212 233 0.90 2 9 0.0002 0.021 15.4 0.8 1 23 278 300 278 300 0.98 3 9 0.021 2.2 9.0 1.0 2 21 325 344 325 345 0.92 4 9 0.035 3.7 8.3 2.9 2 21 722 741 721 742 0.93 5 9 0.0062 0.65 10.7 0.0 3 21 779 797 777 798 0.92 6 9 0.55 58 4.6 0.1 1 23 845 867 845 867 0.83 7 9 0.01 1.1 10.0 1.3 1 23 873 895 873 895 0.99 8 9 0.021 2.2 9.0 0.1 5 23 975 994 974 994 0.94 9 9 0.28 29 5.5 0.6 2 20 1130 1148 1129 1150 0.91
Sequence Information
- Coding Sequence
- ATGGTCGATGACGACTGTACAGATGATTCTATGGCGCTGCAGTATGGTAAACAGAGTGCCACCAAAAGACCGTCGGGACCAGCGCTAAAGCTCGATAAGTGCCGGATCAATAAAGAAACAAAAGATCTTAGCCCAAGCGATTTAAATGAGCAAGCAGATGCGGCATCAGCGGACATAGATCAATCGGCTGAGCCGCGAACTCCGTTCACAACGGAATCATTGATGGAAGACAATCATCCATCGTCGAGTACGCCTCGGACACTATCGCCACCATCGGATGCGGAAGCGGATGAGCATCAGCCGTCTTCGGTACGATCGGATCTACAATCGGGGGCGAATTCACCCTCAGACCATGATGAATCGTCAATAGTTCCTGCTGCTGTAGCTGTTACTGCTATTCCTAAATTACGGTTGAATACGCTGTTAGCTTCAGATCCTGCACTAAATCCCGATGCGAGGAATTTGAAAATCCTCCATGAGGAATCAACCAAAAATCATCATCACCACGAGGAGACGACGAGTGTGGTGGCATCATCTGCTGGCGGCGGGGGATCGTCCACCCCGGTCGAGAAGGTTGTAACGAAAAACCAACACACACCAGCTGTGGTAGATAATGCGCAACGCGTCAAGGTTTTTATGTGTCTTCCCTGTGGCATCGGGTTCTCGTCGAGATCGACACTGGAGGCTCATCAAGCGTACTACTGTTCCCATAGAAAAGAAGCGGAGGAAGATCCTGCTGCAACAGGCGCTGGAAGTGCTTCATCAGGAGATAAAAATTCCAGCCTGACAACCGGCGAGCCATCAGCAAAATCCATTAAGACTGGCAAGCAGTACGCTTGCACACAGTGCTCGTACAGTGCCGACAAGAAAGTCTCATTAAATCGTCACATGCGCATGCACCAAAGCTCACCGGCGCCAAGTTCGAACGCCTCGAATGGTGGCGATGATAGTTCTAGTCAACAAATCGATCGTTACTGCTCTGAATGTGATATTAGATTCTCGAATGTAAAAACTTATCGGGCGCACAAGCAGCACTACTGCAGTTCAAGGCGCAATGATGGCCAAACGACACCAAAACTAGCAGAACAAAGCCTGAAGACGAGCGGTGGCTCGGTGAGTCCACCGCAGCCGCGAACAAAAACCCCAACACCAGCTGCTGTGGTGGCAGCTGCTGCAGCTGCCGCCGCCGCAGTGACCCCTCAACCGTTTATTGCTCTACCGACGAATCCAATTCTAATTATTCCATATTATCTTATCCGGGCGGCCAGTATGATCCCAGGACCATTAACCTCCGTATCGTCTGGTATTGCAAATCCCGAAAGCACATGTTTCTCATTAGAAAACGGATCTCTTAAGCCAATGGCGACCGCCTTAAGCACAAGCAGCATTACGAACAACCAAATCACCCACGTGGAGCCCGCCTCGACTCCACGATCGCATCCTCCGCCGCCGAGTACTCCGTCGAACAACGACGTGAGTGTTGTGGCGCCACTGTTGACAGAGAAGAATTCACGTGCTGCATCGGCGAATAGTTGCAGTGAATCTGTGAAGCAGGTCAAGAAGGATGGCCCTGTGAGAGAGTTCGCACCGCTCGACTTATCCTTGCGCCGGTCTCCGATGCCCAGAGCACAGAGAATCCGCTCGTCGTCCAGTTTTGCACCACCACCCGACGACAGGATTGACATTGAAACCATGATGGAGGGCAAGGAGAATCTTTCCATAGACAGCGGCAGCATGACCCCAGAGCAGATTGTCTGTGCTCCATCGCTGCCCAACAGCCCCTCGATGAGCCCATCGCCTAAGCGGAGAGCTCTCAGCCCGCGAAGTAGCAGTGCGGCTTCGATGTCACCAGTTCCGCCATCGATTTTGGATCATTTACCACTGCGGCCAATGCTCCCCGCCGACATTGCCATGAAACTGACTGAGTCGAACATAATTCCGCCGCTGCTCTCCAAACAGAACCTGGAGCTGGCCTTCAAACTGTCGTCAGCTTCAGCGGCTGCAGCTGCTGCCGCCGCAGCGGCTGTGTCGACAAACAGCAAGCAAAGCGACGTGGCAAAGGCGGCGATCAGCAATCCACTCCTGAGTCTTCCCGGTGCTCCCATCAGCGTGGGAGGTGCATCCACCGGACAGCCACAGATCTTCGTCAAGCAGGGCGTGTCGAAGTGCAAGGAGTGCAACATTGTCTTCTGCAAGTACGAGAACTACTTGGCCCACAAGCAGCACTACTGCTCGGCACGGAATCAGGAGGACACGGAGAACAAGATCAGCACTCCCCCGTCGGCGTCGAACTCGGGAGTCGACACCAGTCCGATTGCCTACCAACAGCTCATCTGCGCGGCCTGTGGCATCAAGTACACCTCGCTGGACAACCTGCGGGCCCACCAGAAGTTCTACTGTCCCAAGGGAGGCGGTGCTGGAGAAGCCTCTGCCGCCCCTCCAGTTACAAGAGAAAAGTGTGCCAAGTGTAAGGTTCTTCACGAAGTTGGCCAGCCCTGCCCGCCGATAGCGGCTGCCGTACAGCAAGGTTCCTACAAGTGTCCCGTGTGTGATGTGGTCAGCCTAACAGCTGCCGAGAGTCGTAAGCATCTTGAGACGCATGGGAGTGTGAAGGCATTTCGCTGCTCAATTTGTCGATACAAAGGAAACACTTTGCGTGGCATGAGAACTCACATCCGGATGCATTTTGACAAGAAGACTTCGGACTTCAACGAGGAGAACTACATGTCGTGCATCTTGGAAGACGATTCTCTAGAGATACCCAGCCCGGCGTCCTTGAACCAAGAACAACTCTCTCAGTTCGCTGCTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGATATGCAACTACTCGTCCTCCTACAAGGGCAATGTGATGCGTCACATGAAGCTTGTCCACTCCCAGCCTGGTGCGTCGCCTTCACCGGAGATGATGATGGAAGAGGGTGAACCACCCGCAGCGCACAGTCTCAACGGAGACAATGGCAGTAGTCTTCCTGAAAGCTTCACCATAAAAACAGAACCGCTAGAACAAACTGCTGCCACCATCACCCGGAACAACAACAATTCGACTCCAAATCACCATCATCACATTGAGCCCTTGGCACAGATCAAATCAGAACCAATCGAGGTTACAGATGGTGTCATTCGATCTCTACCGTCCCCGCTGTCAGTTCCACCGCCACCACTAAACTCATCTTCACCACTGTCCGGAGATGAGAACTCCCTGCTACGGAATTCTTCAACCATTGGTCCCGGTGGTGTTGGCACTGGTGGTGCAGGCGCGATGACCTTCAATCAGAAATACTGTCAAACGTGCGATATCACCTTCAACTACATGAAGACCTATTTAGCCCACAAGCAGTACTACTGCAAGAATAAGACACGCGGTGATACGGACAGTCCCAGTCCGGTACCGCCAGTGCAATCGCCAACAATGTTGAACAAGAACAAGGAGAATCTGGAAGCTGCTTTGTTATAG
- Protein Sequence
- MVDDDCTDDSMALQYGKQSATKRPSGPALKLDKCRINKETKDLSPSDLNEQADAASADIDQSAEPRTPFTTESLMEDNHPSSSTPRTLSPPSDAEADEHQPSSVRSDLQSGANSPSDHDESSIVPAAVAVTAIPKLRLNTLLASDPALNPDARNLKILHEESTKNHHHHEETTSVVASSAGGGGSSTPVEKVVTKNQHTPAVVDNAQRVKVFMCLPCGIGFSSRSTLEAHQAYYCSHRKEAEEDPAATGAGSASSGDKNSSLTTGEPSAKSIKTGKQYACTQCSYSADKKVSLNRHMRMHQSSPAPSSNASNGGDDSSSQQIDRYCSECDIRFSNVKTYRAHKQHYCSSRRNDGQTTPKLAEQSLKTSGGSVSPPQPRTKTPTPAAVVAAAAAAAAAVTPQPFIALPTNPILIIPYYLIRAASMIPGPLTSVSSGIANPESTCFSLENGSLKPMATALSTSSITNNQITHVEPASTPRSHPPPPSTPSNNDVSVVAPLLTEKNSRAASANSCSESVKQVKKDGPVREFAPLDLSLRRSPMPRAQRIRSSSSFAPPPDDRIDIETMMEGKENLSIDSGSMTPEQIVCAPSLPNSPSMSPSPKRRALSPRSSSAASMSPVPPSILDHLPLRPMLPADIAMKLTESNIIPPLLSKQNLELAFKLSSASAAAAAAAAAAVSTNSKQSDVAKAAISNPLLSLPGAPISVGGASTGQPQIFVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEDTENKISTPPSASNSGVDTSPIAYQQLICAACGIKYTSLDNLRAHQKFYCPKGGGAGEASAAPPVTREKCAKCKVLHEVGQPCPPIAAAVQQGSYKCPVCDVVSLTAAESRKHLETHGSVKAFRCSICRYKGNTLRGMRTHIRMHFDKKTSDFNEENYMSCILEDDSLEIPSPASLNQEQLSQFAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEICNYSSSYKGNVMRHMKLVHSQPGASPSPEMMMEEGEPPAAHSLNGDNGSSLPESFTIKTEPLEQTAATITRNNNNSTPNHHHHIEPLAQIKSEPIEVTDGVIRSLPSPLSVPPPPLNSSSPLSGDENSLLRNSSTIGPGGVGTGGAGAMTFNQKYCQTCDITFNYMKTYLAHKQYYCKNKTRGDTDSPSPVPPVQSPTMLNKNKENLEAALL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01223805;
- 90% Identity
- -
- 80% Identity
- -