Basic Information

Insect: Syritta pipiens
Gene Symbol: -
Assembly: GCA_905187475.1
Location: LR994572.1:31856316-31861712[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.46 48 4.8 3.9 1 23 1240 1263 1240 1263 0.95

2 12 0.00019 0.02 15.4 5.3 2 23 1420 1441 1420 1441 0.97

3 12 0.00039 0.041 14.5 0.4 3 23 1449 1469 1447 1469 0.98

4 12 1.2e-07 1.2e-05 25.6 3.6 2 23 1476 1497 1475 1497 0.97

5 12 5.6 5.9e+02 1.4 0.1 6 23 1511 1528 1509 1528 0.95

6 12 0.006 0.64 10.7 3.4 3 23 1535 1556 1533 1556 0.95

7 12 0.11 11 6.8 0.1 2 23 1567 1587 1566 1587 0.96

8 12 5.7e-05 0.006 17.1 0.8 1 19 1593 1611 1593 1612 0.96

9 12 3.3e-05 0.0035 17.8 0.5 1 23 1623 1645 1623 1645 0.99

10 12 0.00017 0.018 15.6 9.0 1 23 1651 1673 1651 1674 0.96

11 12 0.00089 0.094 13.3 4.7 1 23 1679 1701 1679 1701 0.98

12 12 0.0011 0.12 13.1 6.0 1 23 1707 1729 1707 1730 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.46	48	4.8	3.9	1	23	1240	1263	1240	1263	0.95
2	12	0.00019	0.02	15.4	5.3	2	23	1420	1441	1420	1441	0.97
3	12	0.00039	0.041	14.5	0.4	3	23	1449	1469	1447	1469	0.98
4	12	1.2e-07	1.2e-05	25.6	3.6	2	23	1476	1497	1475	1497	0.97
5	12	5.6	5.9e+02	1.4	0.1	6	23	1511	1528	1509	1528	0.95
6	12	0.006	0.64	10.7	3.4	3	23	1535	1556	1533	1556	0.95
7	12	0.11	11	6.8	0.1	2	23	1567	1587	1566	1587	0.96
8	12	5.7e-05	0.006	17.1	0.8	1	19	1593	1611	1593	1612	0.96
9	12	3.3e-05	0.0035	17.8	0.5	1	23	1623	1645	1623	1645	0.99
10	12	0.00017	0.018	15.6	9.0	1	23	1651	1673	1651	1674	0.96
11	12	0.00089	0.094	13.3	4.7	1	23	1679	1701	1679	1701	0.98
12	12	0.0011	0.12	13.1	6.0	1	23	1707	1729	1707	1730	0.96

Sequence Information

Coding Sequence: ATGGGTGACAATGTACAATGTCCAGTTTGTACACTTTACTTGCTTCCTGGCATGGATCTGTCTGATCACTTGGAGACACATCCAAAGGAGCAGGTCATCAAGGCGCTTGTACAATTGAGCCTTAAATCAGAGTCAACTGAAATAGTAACGCCCGATACTCCAAAGAAAGCCAAAAATATATCATCTTTTGTCGAGAGCAGCAGCGTTAGTCGTCAAGCAACGGAAGATGAGAGAACGACTCCGCTATCGGAGATCAGTGGGAGTGGTAGTGGGAGCAGTGGTGCCTCCGTCACGCTTGGAATACATGATAAGCGACGGGAGATCGACGACAACTCAGGGCTGCCTCCATTGTCACAGAATGGGTTGAATAGACAGTGCGGGTATCTGATTGAGAACAACAGCAGCAGCAGTAGCAGTAGTAGTAGTAATTTCTTTGGACCACCGACACCATATTATCGTCATCATAGCCATCATAACCATCATCAACAGCAACAACAGCAGCAGCAACAATCACAAGTCCACTACCATCCTTACCACGGTCACCCACATGGTGGTGGTAGCTCGACGATGGGCATAGGACCAGCGCAGCCGCCATTGCGACTTTTCTCCTATCAAGCACCGCCCAAACCGCTGCAACCACCGCCCGCCTATGGCACGGCCATAAGCCAACTTAGATCTCAAAATAGCCAAAACCTTAACCTAACCAATGTCAATCGCTCGCTGTTACACACAAGTTACACGCCCACATCGTCATCATCCCTATCCTCGTCGTCGTCATCTTCAGCTATGACACAGTCGCGTCTGCCGCCACCACTCCCACCGCCGCCTCTTAGTCAGCGGTACCAGCCCAACTTCCCGCATGACGACTCCTCTTTCAATGACAGTTGTGAGAACAATGCAATGTCTCCGCGAAGATCATCGATGACACCGCCCACTCGGCCACCTCCTCAACTCTACCGCTCGCCACTATCGTCAAGCGGGCAATACTCAAGGCAGTCGAGCTCTCCGTACTCCGTGATGACAGGCTCACCATCTGTACTCCGGTTTGCCGAGTCGCCTGTCACTGCACAATACCTGGAGCGTGAAAACGGAGACTTCATTGTCCAAGAAACTCCCAAGCACGTCGTCGAGTGTGTCGAAAAGGACGATGGTGAGTTTTCCGTAATCGAACGAGTCTATCACATGCCACCGAGTGTTGTTCAAATAAACGAGGATCAGGATGATGATATGTCGGATCAAGGATCCAACAGTGATGACATGAAGACACTGGAAGACGACCGGCCGAACGGAACGTGGTCCGCTGGTCGGTCACCAGAACACAGCCTGGCAGGTCAACAGCGACAGCAAAAGAAATCCGGTATAACTGTTCTCAGTGATGTACAATTAGATATAAATGAATACTTAGACTTAATGGGAAACATAATTGCCTTAAGCAAGGCGGCTAAGACTCGTACTGAAATGATAAAGATTGAGAAGATCGACCCCGAAGACCCGGACGAAGTGAAGGAGGAACTTCGCGGATCCATTTGCCTCGACGAGACTGATGAGAACAACTCTTCGGTCATAGGTCAGAAACAAGACGAGATTAGGGCGGATGAACAGCAGGACAGCAGTGAGAAGCCATCGTGTCCTGTGGCATCAACAAGTCCTTTTGCGGCAACTCCTTCAGCGGAGTCACCGGTAGTCCCTGGGACAACAAGCGTAATACGCCTTGCAGCCAATTCCACCGTCGTAAGCAATACAAACACAGCAACAACAAAAGTTGACGAAACCTCGGAGCCTACGAGCCCCCCTGACGCACCCGTTACAAAAGTGGAAGAAGCTGTCCAAACGACAAGCGTTGAAATGGAAGTCACGAAAGTTGAAGAGGCAGTACAGACAACGATTGCTGGAGTCTCCGTGTCAACAATCGAGGAAAGCACAAACACGCCCACGGAAACAAAAACCGAAGATGCGCTTTCCAACACCTGCCCCGAAAGTCAACCTACAGAACAGGAAGAAGAAAAAGAAATACCAACTACAACAACGCTGGACTCACTCCTGGATTCGACAGAACCGCCCACTTCAATAAGCGCTCAACCTCAACCAGACGAGAATCCAGAAGAAGAACAAACATCGACAACCCCAAGCACTCAGGCACCAGCAACTCAAGATTCGGAAGAAATGCAGACGCCAACATGCACCAAATCACTGGCAATGGATCCACCAACAGAGCCAACGCAGCCAATAGATCTCCCAGTTCAATCAGAGTTGTTCATTTCCCACGTCGAGCATTCAGTAAAGTTCGAGATTACAGAGATAATAGAAAAGCCAGAACAGGAGGAGGAAGAGCCCGAAAAGCAGCCTGATAAGCCACAAAAACTGGAGAAGCAAGTGAAAAAACAAGAGAATCCACCGATTGTATCGTATCATCATCAGACCGTCAAGCGTCCGATCAAGAAGGTGCCCAAAAAACTTGTCATCAAACCAAAAAGCAAAAACTCTAGTGTTACTACGCTTGCATCGCAAACACCGACACCGAAACCAACGGCCACAGCAACATCTACAGCAACAGCAACGCTACCGCCTACACCTTCTACGTCAACAGAAGCAGTTGCTCTGGAACCGGAAAAGGTGGAGGTAATGTCTGAAGCTGAGGTGTCGCAGGAGGAAATGCGTTGTATCAAGATGGAGACTCTGCCGATCATGACTTTGGAGCCCATTCCACCACCGCTCTTTGCAGACGCTGACGAGAAACTTCCACCAGACGATGATGTACAACCGTCAACGTCAAGCCTGGTAACGGCAGACCACGAAGACGCTTTGCCAGCGATTAATCCCTCAAAGGAGAAGCCGACCGCCGATTTGGCAGCATTCCTCGACGAGTGCATGAAGAAGGAAGTCGTCGAGGAGCATCCGATGCACTCGATATTTGGCATGGAAATTGAGGAAACGGGAGAAACTCTGGACGATCCACTGTCGCCTCAGTTGGCATCCGGATTCCCCTCGGCTTCTTTATTCTCCAAGCCCCTCTTGAACTCCGAGCACCTCTCGATATCAGAGTCTGTACTACCCGACAGCAATGACTTGGAGGATCAAGATCCTCATCAACCGCAGCAGCAGCAGCAACAAAATAACTCAGCCTACGTTGAGTACCCGTTCAGTTTCCTCTACAACGCCGAAGCGAACCACCAGGAAGACCACAAGCACAGCGGCTCGCCACCGATGTACTGCAGTGAAAACTTCAACAAATACAGCGCGAGCACCAGCTGCGGCAATAGCGCCAGCTGCACTTGGTATCAGTCACAAAGCAGCGAAAACGACTTCGAAATCGACGGCAAGGGCAGTTACCTGGACTTGGACTCGTGCAAGCGGAGTGCGTCGTTTGCTGCTGCCACCGAAGGCAGCATGCCGACAACAGACACGTTAAACATAAGAACCGACGAGAAGATGCCAGCGAAGGGCGAAATTTCCGAGCAGGAGAGCAACTGTGGCGTGGAGAACTCGTGGAGCCAACCGCTTTACAACGCTCGTTTTTCGAACCCCTACCATAACATCATGGCGCTCAACGAGAGCTGGAGTCACGACCACTACTTTCGCCCGCAGGATCTAAGCTCTTCAATAGAGACAAAGAACTTTAGTCTGCGACTTACCGAGGAATCCCCGATCATGGACACGCTGCCATCGACATCGAAGCGAAAGAATAAGGCGATCGCAAAGTTGCCGCGAAAAAAGACGTTCCAATGCACGCATTGCAGCACACACTTTCCGCTTCTGAAGGAGAAGAACGCCCACTTGATAAAGCAGCACGGCTACAAGCGTGTGAATCGGCGTCTTGTGCGTGACCCACCGACTTCAACAGTGACCACGGCAACAATGAACACAATCGAGGCCGGTGCCTCCTTGCTGCTTGGCCTGGAACAGTGCGCACTACCGCCGCCACCGCTGGCGGAGGAGGAAGATTCCAAGGCGGCGATAGTTAAGATCGAGCAGGAGAACCAGGAGCAGAAGGACTGTAAAAAGAACATAACCAGCCTAACACTGACCAGCCCAGTACAACCAACAAGCGGAAGTATATCTCGCACCAAGTACGATTCGATGCGGGCACGTGATAACCGTATGCTTATCAACTTCAACTTGAACGCGCTGAACGTCAAGAACGAGGGCGAAGTGCACAGTCATTACATAGAATCGAAATCGTCGTTCTGTTGCTTTGTGTGCAAGAGGGACTTCCTCACGGTCAAGCTGTACGACGAGCACTTGAATGAACACCCTGCCGAATGTTTTACATGCCACAAGAAATTCACACGATGGAAAAACTTTATGGTCCATCTGAAGCGGCACCTGGGGTGGAAGGACTTTGGCTGCACGTTCTGTGAGAAGAAGTTCGTGATTCGCAGCGCCCTCGTGGAGCACATGCGAATGCACACGGGTCAGACGCCTCTGAAGTGCAAAATCTGTGGCAAGAGTTTTAAGCGTTATTCCAATCTGACCCAGCATCGGAAGCGGCACGGAACTAAGATCAACCGCAGCAAGGAGTATGTGTGTTTTTGCGGTGAGGTGCTGCCGTCGAAGGCGCGCTTCATTTGGCACAAAGAAACGCACGACCTAAAGCCCAAGTGCTGCCCGTACTGCAGAGATCGGTTCGTGCACGCAAACAGTCTGCGGCGCCACATTCGCCTGGCCCACTCGGACAAATTCGACTACACCGAGCCCATGGAGTGTCCCATGTGCAAGCAGATCTACGCAAAATCAAGCATCAAAGCGCACATGGCAACGCATACGATAGATACGCAGCACGAATGCCTCATTTGCAATAAGTCTTTCAGCACGAAGTGGAATTTAAAAATCCACAATTGGGTCCACGCCAATCGCACCACGAAACCCTACAAATGTGATCAATGCGTGAAAGCATTTGTCCGCGAGGTTGACTACAACAATCACATGAACTCGCACAAACAAATCAAGCCATACACGTGCGAGCACTGCGGCTGCAAATTCATTCGTAAATACAATTACATCCGGCATCGGCGTGAGCATCATGGCAATAAGAAATTCACCTGCGATCTCTGCGGTAAACTTTTCCACCGACACTACTATCTAATCGAGCACAGGCGCATCCACACCGGCGAGCGACCATTCCAGTGCACGATATGTGGTAAAAGTTCCACAACGAAGACGAACCATAACAAGCACCTGAAGATTCACCATTCTCGGGATCCGTTCACCTCGGAGGCGTAA
Protein Sequence: MGDNVQCPVCTLYLLPGMDLSDHLETHPKEQVIKALVQLSLKSESTEIVTPDTPKKAKNISSFVESSSVSRQATEDERTTPLSEISGSGSGSSGASVTLGIHDKRREIDDNSGLPPLSQNGLNRQCGYLIENNSSSSSSSSSNFFGPPTPYYRHHSHHNHHQQQQQQQQQSQVHYHPYHGHPHGGGSSTMGIGPAQPPLRLFSYQAPPKPLQPPPAYGTAISQLRSQNSQNLNLTNVNRSLLHTSYTPTSSSSLSSSSSSSAMTQSRLPPPLPPPPLSQRYQPNFPHDDSSFNDSCENNAMSPRRSSMTPPTRPPPQLYRSPLSSSGQYSRQSSSPYSVMTGSPSVLRFAESPVTAQYLERENGDFIVQETPKHVVECVEKDDGEFSVIERVYHMPPSVVQINEDQDDDMSDQGSNSDDMKTLEDDRPNGTWSAGRSPEHSLAGQQRQQKKSGITVLSDVQLDINEYLDLMGNIIALSKAAKTRTEMIKIEKIDPEDPDEVKEELRGSICLDETDENNSSVIGQKQDEIRADEQQDSSEKPSCPVASTSPFAATPSAESPVVPGTTSVIRLAANSTVVSNTNTATTKVDETSEPTSPPDAPVTKVEEAVQTTSVEMEVTKVEEAVQTTIAGVSVSTIEESTNTPTETKTEDALSNTCPESQPTEQEEEKEIPTTTTLDSLLDSTEPPTSISAQPQPDENPEEEQTSTTPSTQAPATQDSEEMQTPTCTKSLAMDPPTEPTQPIDLPVQSELFISHVEHSVKFEITEIIEKPEQEEEEPEKQPDKPQKLEKQVKKQENPPIVSYHHQTVKRPIKKVPKKLVIKPKSKNSSVTTLASQTPTPKPTATATSTATATLPPTPSTSTEAVALEPEKVEVMSEAEVSQEEMRCIKMETLPIMTLEPIPPPLFADADEKLPPDDDVQPSTSSLVTADHEDALPAINPSKEKPTADLAAFLDECMKKEVVEEHPMHSIFGMEIEETGETLDDPLSPQLASGFPSASLFSKPLLNSEHLSISESVLPDSNDLEDQDPHQPQQQQQQNNSAYVEYPFSFLYNAEANHQEDHKHSGSPPMYCSENFNKYSASTSCGNSASCTWYQSQSSENDFEIDGKGSYLDLDSCKRSASFAAATEGSMPTTDTLNIRTDEKMPAKGEISEQESNCGVENSWSQPLYNARFSNPYHNIMALNESWSHDHYFRPQDLSSSIETKNFSLRLTEESPIMDTLPSTSKRKNKAIAKLPRKKTFQCTHCSTHFPLLKEKNAHLIKQHGYKRVNRRLVRDPPTSTVTTATMNTIEAGASLLLGLEQCALPPPPLAEEEDSKAAIVKIEQENQEQKDCKKNITSLTLTSPVQPTSGSISRTKYDSMRARDNRMLINFNLNALNVKNEGEVHSHYIESKSSFCCFVCKRDFLTVKLYDEHLNEHPAECFTCHKKFTRWKNFMVHLKRHLGWKDFGCTFCEKKFVIRSALVEHMRMHTGQTPLKCKICGKSFKRYSNLTQHRKRHGTKINRSKEYVCFCGEVLPSKARFIWHKETHDLKPKCCPYCRDRFVHANSLRRHIRLAHSDKFDYTEPMECPMCKQIYAKSSIKAHMATHTIDTQHECLICNKSFSTKWNLKIHNWVHANRTTKPYKCDQCVKAFVREVDYNNHMNSHKQIKPYTCEHCGCKFIRKYNYIRHRREHHGNKKFTCDLCGKLFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTSEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -