Basic Information

Insect: Syritta pipiens
Gene Symbol: -
Assembly: GCA_905187475.1
Location: LR994571.1:31365685-31389042[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.019 2 9.2 1.1 3 20 1054 1071 1053 1073 0.94

2 14 0.00043 0.045 14.3 0.3 1 23 1080 1102 1080 1102 0.99

3 14 0.028 2.9 8.6 3.1 2 23 1107 1128 1106 1128 0.94

4 14 4e-06 0.00042 20.7 0.4 1 23 1134 1156 1134 1156 0.97

5 14 1.1e-05 0.0012 19.3 1.5 1 23 1162 1184 1162 1184 0.98

6 14 0.0013 0.14 12.8 1.0 1 23 1190 1212 1190 1212 0.96

7 14 0.00062 0.065 13.8 2.7 1 23 1218 1240 1218 1240 0.95

8 14 0.055 5.8 7.7 3.8 2 23 1613 1634 1612 1634 0.97

9 14 0.014 1.5 9.6 3.5 1 23 1640 1662 1640 1662 0.97

10 14 0.0021 0.23 12.1 0.9 1 23 1670 1692 1670 1692 0.98

11 14 0.0049 0.52 11.0 2.0 1 23 1698 1720 1698 1720 0.96

12 14 1.1e-05 0.0012 19.3 1.0 2 23 1727 1748 1727 1748 0.97

13 14 0.011 1.1 10.0 3.4 1 23 1754 1776 1754 1776 0.99

14 14 0.17 18 6.2 0.1 2 23 1780 1801 1779 1801 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.019	2	9.2	1.1	3	20	1054	1071	1053	1073	0.94
2	14	0.00043	0.045	14.3	0.3	1	23	1080	1102	1080	1102	0.99
3	14	0.028	2.9	8.6	3.1	2	23	1107	1128	1106	1128	0.94
4	14	4e-06	0.00042	20.7	0.4	1	23	1134	1156	1134	1156	0.97
5	14	1.1e-05	0.0012	19.3	1.5	1	23	1162	1184	1162	1184	0.98
6	14	0.0013	0.14	12.8	1.0	1	23	1190	1212	1190	1212	0.96
7	14	0.00062	0.065	13.8	2.7	1	23	1218	1240	1218	1240	0.95
8	14	0.055	5.8	7.7	3.8	2	23	1613	1634	1612	1634	0.97
9	14	0.014	1.5	9.6	3.5	1	23	1640	1662	1640	1662	0.97
10	14	0.0021	0.23	12.1	0.9	1	23	1670	1692	1670	1692	0.98
11	14	0.0049	0.52	11.0	2.0	1	23	1698	1720	1698	1720	0.96
12	14	1.1e-05	0.0012	19.3	1.0	2	23	1727	1748	1727	1748	0.97
13	14	0.011	1.1	10.0	3.4	1	23	1754	1776	1754	1776	0.99
14	14	0.17	18	6.2	0.1	2	23	1780	1801	1779	1801	0.95

Sequence Information

Coding Sequence: ATGGCCAGTACGGCCGTATCATCATACTTTCCATATAATGCCCCATCAACAACTAGGCATTGTGGAGAGGTACTCTGCTCTCGGAATTTCGAGAACTTTTCGTTAAAATGTAGCAAGTGCTATCAGGAGTTCAACTTGCTAAGCTACACATTGTTCATCAAGCACATCAAAGAATGTCTTACACAAAGCCTTCCAGAACTCGATATGCCAATCAAGGAAATAATCTCGATAAAAAATGATAATATAACGTTCGACCCATTTCCAACAGTTTACCCAGATATACTGAATAACTCAGATGTGAACGCAACAATCGAGAACACTGCAGCCATAGCGAACACCAACGATGTATTGGACAATACATTCACTCCACTATATGATCCAATTACAACTTTCAAAGAAGAACTCGTAAAGGAAGACCCTGTAGAGGAATACAATTCAGGATATGAATCAGTTCATGATGATGGAGAATCTCAGTCGGATTATCAAAATGAAGATGATCTATCTATCGACAAGCTTGGGTATCGTCGAGTAACCGAAGGAATAATCGCTGAATATAAGAAAAATGAAATCTTATGGCGTGTGCCAGAAGGCACAAAAGGTAGACGAAAGGCTATGAAAAATGTGTATAAGAGAATCAGCAAAGCCATCAACGCGAAGTTTAGAACGAACTACACAGACAGAGAATTGCGAAATCGAATTTATAATATAAAGTTTGCCTACAGGCGAGTTCTTAAAAGGAAACAAGAATTTGAAGCTCGCAATGCCGGCACGGGTAAGGAGTTCACTTCGGCATTGTGGTACTTTGATAAGATGTCGTTTATCGATAACGCTGAGATGATTACTTCAGATGAGATTGATCCCATATTAAATTCTTTAAGTAAAACTGAAACGAATGCTGACGATTCAACAGAAGAGGAGGAAGATGCTTCGGGAGATGATTCTGATGATAGCTATGATTCAGATGAAAAAGCGGCAAAACCTAAAACGAGCAAGGCCAAGGAAAAGAAACAACGGCCATATCATAAGAACTTAAGCGAAAAGAAAACAGTAGCGGATTTATTAAACCAATACAAGCAGTACCCGTATCTTTGGGATCAAACTACGGACTTGTATTCGGATAGATACGCTCGAAAGGCAGCGTTCCGTAAGATCACAAAGTACATCAATAAAACGTACAACAAAAGCGTGACAGACAAAGAAGTAAGACAGCAAATCGTAAACCTACGCAGTGGATATAGACGAGCTCAGAGAAAGATGCATAAGCCAAAGCATCGCGTCAGTTTATGGTACTACAATCTCATATCGTTCATCGATAAGAAGCCATTGTTGGAAAGTCCATTTGAGTTCCAAGCTGTACCAAAGACAGATTCCCTTACAGGAAAACAAGTAACATCCGTGCTACCTGGCAGTGGTCAGCCTGAGGAATTGACAGAATTAATACCAAAAACTGAGTTGGAAACAAGTAAAGAAAACAATGGTGACGATGATGGTGATGACAGCAAGGACGAAACACAAGAGCAATACTGCCGCTCTGGTAGCGATAAACTTTTGATTACAGGCCTTATCGAGGAGTACAAACGTCATCCATGCTTGTGGGACAATGAACAATACAGAATCAGTAATCGTGTCTTGCGTCAGAATGCGGTTAAGGAAATGACAGAGACGCTTAATGCAAAATTCAAAAGAACCTTTACCGATGATGATATACGAAATAAAATTATCCAACTCAGAAGCACCTACAGGCGAGTCCTGCGTCACAAAGAAGCCTTTGAAAAGAAGCATGCTGATTCAAAGATGAAATTCCACCCGCAGTTGTGGTACTTTGACAAATTTCAATTCATTGGAGCGAAAGATAGTGACTTTTCAGTGGCTCGTAAGAGGAAACGAAAAGATTATGTTGAGAGTTCGCATGAAGATGAGGACATGGAATCACAAGCTAAAAAGGTGTGCGAAGACCAAGAGGATGAAAGTACAATGAGCTTCGACAATGACGATGATGATTCATGCAGCAATTTTAGTTTAATGGGCGAAACTGAATCTGAAAAGACGGGCGATGAAAATGTAAATCACACTCAGAACAAATCATTATGCAAGAACAAAGAGATATTGACCGCTCTCATAGAAGAATACAAGAAATTGCCCTGTCTCTGGTCAGCGAAACACTACGTTCTGAACGGCCATGCGCGCAAGAAAGCTTTCCACAAATTGGCGATGGTTTTAAATGAGCGCTTAAACACATCGCATTACGATTCATCGAGAGTGCAGCGGGAAATTCGTAAGATGCGCTTTTCGTACAAGAGGTGCAAGAACAGAATAAAAGAGGATCCCGAATCGAAGAGCGGAGTTTGGTACAAGGACCTATTGTCTTTTATTGACAATGAGAATAGTGACGACATCAACGATGGAGATTCACTTCCCGTAGATGGTGGTTTAGACGACGAAAAGACCCGAGAACGAACATTCAAGCTGCCAAGCGTTGAGGATGTCTCTGACATCATTGAGGCCTACAAGGCAGCACCGATCTTATGGGATACCAATCATCCGCGGCGCAGCTTCCGCAGCGAAAAAAAGAAATGTCTTGAAGAGATCACCGCAGCCCTCAGTCAGAAGTACGAACGCCCGATGACCATTGCAGAGTTCCGTTATCACATACGCTTTTTGAGGGAATCCTATAACCGGGCTGTAAGGCTGAAAGCTAAAGACAGTTCCATCAGCGAAATCAACTTCCCATTCTACTACGACCAGATGTCGTTTCTGGAACCCTTTGTTAAGAAGCCGCCCACCACAACGCCAGTCCCTGTTGCAGAGTGTAACCCTGATGAGGATTTCAAGTACCTTACTGAAAATAAAGATCTCATGATAAGCTTCATAGAGATGTTCAAAAAACATCGTTGCTTGTGGGATCAGAAGCACAAGCTCAGGCATAGTGAAGTGGCCCACACAAATGCTTATGGCAGGCTCATGAAACTATTCGCAGACCGTGGCGTCGTTTCAACAAGAGAGCAAGTTATGTCAGCAATTGGTTTCCTCAACAAGACCGTTCTGGACATGAAAAAGTTGCTCGAGTCCTACGACACAAACAACACCACCACCGAGGAGCCTGTCTGGTTCTACGAACATCTGAAATTCATGGGGAAAATTCCGCGCGTCAGCAAGAACTGCAGCCACTGTGACCAGCAGTTCCGTTCTCTGCGGGAATATGAAAAACACAAAATCGAAATCACTGGTGACTACCCCTACAAGTGTGCGGTGTGCAACGCTGGATTTGTCTCGAGATCTAAGTACGCCTACCATATGATCACCCACAAGGAACCTTTGAAGTGTGATCAGTGTGAGTTCCAGGCATTCGATAAGCACAACTTTAACGTGCACATGCGACGGCATAAGCGCATCCTTGCTTACCGTTGTCCTGAGTGTGACAAGGGTTTCGTCACGACAACAGAACTAAAGCGACACGAACAACTACACTCCGGAGAGAAACGATTTATTTGTGATATTTGCGGCAAGTCGTTAATATCTAATTCTGAATTTTCTCATCACATGAAACGACATACTAATCAGCGAGATTTTAAGTGTGAAATATGTGGAAGTGCGTTCTATACACACAAAGCTTTGCGGGATCATTCAGCTTCTCACTCGGATGAACGTCGGCACGTCTGTGAGACTTGTGGAGCGTCATTTAAAAGGCAAAAGACCCTCTACCAACACAAGTCACTACATAGTGACAAAAAGAAGCACGAATATCATGTGAACCACGCGCTTTGTACGCCACACGCCGCGATACGTGAAATTGCCCTTCCAGCAGAATCTGAAAGTTTGTGTGACGATGTTCCCCTTGGCGTTGTTGACAGTCAGCCGACTGAATTGGATTTGGAAGATGGATTGGAGGCATTTCAGGAACTCATCGAGTATACAAACAGTGATGAGGTTGCAAGTGAAATTGAAAATATTATGGAAACATGTGAGAGTGCTTCGGATAGCTATTTACTTCCCGAAATTGGGTGCTACTTGTTCAAAGAAGAGGTAGAGATGGAGCATGGACAGCAGGAGCAAGATGTGGAGAATGGAGACCAGCAGTTTTCACTGATCATTGCGGATGAGATTAAAGAGGAACAATCAACCGAACGGGAGAAAGCTACAGCTGATGAAAAGAAACAGGGAGATGAGCTAACAACAAACGACCCTATCACCATTAGGATAATTGAACTCTACAAATTAAATGAATGCCTGTGGAGTAAGGGTCACCCGGACTATCACAATCGTGCGGAACGCAACGATATTTTTCACAAAATGATTGACACCCTCCATGAGGAGTTCCAGTGCACGTTGACGATGCAAGAACTCAATTACAAGCTCAACCGCCTGCGGTATGCTTTCTACAGAGAGCTTCGGAAAATGAAAGCCTTCCAATCGAACAACAACAACCCCAATGAGAAATTCAGTTCCAACCTTTGGTACTTTGATCGCCTCATGTTTCTTAAAGGAAACACCAGTGCTCTGCTCGAGGTGCCCAAGTCTCAAATCCTTCTCGACATTATCGACGGGTACCACAGATGTCAGTGTCTGTGGGACAAATCTCATCACGACTTCCGGAATCGCCAGGTGCGGTACGCAGCCTACGATGCAATCGCCACAACAATAGAGATCAAGTACTCGATCCGAACAACACGCAGGTCGGTTGTTCTTCAAATCAAGAAACTCCAAGCACTCTATGCCCAGTCACTCCGGTCAGAGGGTGAAATGAACGCAGAGAAAAAGGAATCTACTCCACTCAGAAATCTTCTTCTCAAGAAGCTGAGTTTTTTGAAGGGAAAAATCCGTGGATGTCAGGAAATCCAGTGTAGCTTTTGTGATGAAATATTCTATTCCAATTGCAAGTACAAACTCCACTACCAGAAACACACCGGGAACCTGCCACACACCTGCAGCATCTGCAACAAGCAATTCCTGCACAAACCAAGTTTGAAGGCCCATGAAGACACGCATTTGGATGTAAATGACCGTGCGTTTACGTGTGAGTTTTGCGGCTTAAAAATCTCCGATCGTACCAACTACCGAGTTCATGTGCAGCGGCACAAGGGTGAGCTGCGGCATGAGTGTAAGGTTTGTAAGAAGCGCCTTGGTACGACAACCGAGCTAAAGACTCATATGCTGGATCACACTGGAGAGAGACCGAATGTGTGTGACCAGTGTGGTAACCAGTACAAGTCGAAGAGTGAACTAACGCGCCATATGCGACTTCATGCTGCAAGGAGGGAGTTCAAGTGTGGGTACTGCATAAAGGCGTTTCACTTTAAGACACAGCTCGATCAGCACATGCTGACGCATTTTTCGCAACCATGTGATATTTGTGGCGAGGAGATAAACGGCCGGCGGGCTTTTATGAGGCACAAAAAATTGCATTGCTAA
Protein Sequence: MASTAVSSYFPYNAPSTTRHCGEVLCSRNFENFSLKCSKCYQEFNLLSYTLFIKHIKECLTQSLPELDMPIKEIISIKNDNITFDPFPTVYPDILNNSDVNATIENTAAIANTNDVLDNTFTPLYDPITTFKEELVKEDPVEEYNSGYESVHDDGESQSDYQNEDDLSIDKLGYRRVTEGIIAEYKKNEILWRVPEGTKGRRKAMKNVYKRISKAINAKFRTNYTDRELRNRIYNIKFAYRRVLKRKQEFEARNAGTGKEFTSALWYFDKMSFIDNAEMITSDEIDPILNSLSKTETNADDSTEEEEDASGDDSDDSYDSDEKAAKPKTSKAKEKKQRPYHKNLSEKKTVADLLNQYKQYPYLWDQTTDLYSDRYARKAAFRKITKYINKTYNKSVTDKEVRQQIVNLRSGYRRAQRKMHKPKHRVSLWYYNLISFIDKKPLLESPFEFQAVPKTDSLTGKQVTSVLPGSGQPEELTELIPKTELETSKENNGDDDGDDSKDETQEQYCRSGSDKLLITGLIEEYKRHPCLWDNEQYRISNRVLRQNAVKEMTETLNAKFKRTFTDDDIRNKIIQLRSTYRRVLRHKEAFEKKHADSKMKFHPQLWYFDKFQFIGAKDSDFSVARKRKRKDYVESSHEDEDMESQAKKVCEDQEDESTMSFDNDDDDSCSNFSLMGETESEKTGDENVNHTQNKSLCKNKEILTALIEEYKKLPCLWSAKHYVLNGHARKKAFHKLAMVLNERLNTSHYDSSRVQREIRKMRFSYKRCKNRIKEDPESKSGVWYKDLLSFIDNENSDDINDGDSLPVDGGLDDEKTRERTFKLPSVEDVSDIIEAYKAAPILWDTNHPRRSFRSEKKKCLEEITAALSQKYERPMTIAEFRYHIRFLRESYNRAVRLKAKDSSISEINFPFYYDQMSFLEPFVKKPPTTTPVPVAECNPDEDFKYLTENKDLMISFIEMFKKHRCLWDQKHKLRHSEVAHTNAYGRLMKLFADRGVVSTREQVMSAIGFLNKTVLDMKKLLESYDTNNTTTEEPVWFYEHLKFMGKIPRVSKNCSHCDQQFRSLREYEKHKIEITGDYPYKCAVCNAGFVSRSKYAYHMITHKEPLKCDQCEFQAFDKHNFNVHMRRHKRILAYRCPECDKGFVTTTELKRHEQLHSGEKRFICDICGKSLISNSEFSHHMKRHTNQRDFKCEICGSAFYTHKALRDHSASHSDERRHVCETCGASFKRQKTLYQHKSLHSDKKKHEYHVNHALCTPHAAIREIALPAESESLCDDVPLGVVDSQPTELDLEDGLEAFQELIEYTNSDEVASEIENIMETCESASDSYLLPEIGCYLFKEEVEMEHGQQEQDVENGDQQFSLIIADEIKEEQSTEREKATADEKKQGDELTTNDPITIRIIELYKLNECLWSKGHPDYHNRAERNDIFHKMIDTLHEEFQCTLTMQELNYKLNRLRYAFYRELRKMKAFQSNNNNPNEKFSSNLWYFDRLMFLKGNTSALLEVPKSQILLDIIDGYHRCQCLWDKSHHDFRNRQVRYAAYDAIATTIEIKYSIRTTRRSVVLQIKKLQALYAQSLRSEGEMNAEKKESTPLRNLLLKKLSFLKGKIRGCQEIQCSFCDEIFYSNCKYKLHYQKHTGNLPHTCSICNKQFLHKPSLKAHEDTHLDVNDRAFTCEFCGLKISDRTNYRVHVQRHKGELRHECKVCKKRLGTTTELKTHMLDHTGERPNVCDQCGNQYKSKSELTRHMRLHAARREFKCGYCIKAFHFKTQLDQHMLTHFSQPCDICGEEINGRRAFMRHKKLHC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -