Spip004307.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- -
- Assembly
- GCA_905187475.1
- Location
- LR994573.1:5960653-5965552[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00082 0.086 13.5 0.1 2 23 35 56 34 56 0.96 2 16 1.1 1.1e+02 3.7 5.8 1 23 62 85 62 85 0.90 3 16 0.00033 0.035 14.7 0.2 3 23 90 111 88 111 0.94 4 16 0.028 2.9 8.7 0.1 2 20 120 138 120 140 0.91 5 16 2.9e-05 0.0031 18.0 0.6 1 23 148 170 148 170 0.97 6 16 0.0016 0.17 12.6 2.0 1 23 176 198 176 198 0.97 7 16 0.00023 0.025 15.2 2.6 1 23 204 226 204 226 0.95 8 16 2.2 2.3e+02 2.7 5.5 3 22 234 253 233 253 0.93 9 16 0.065 6.8 7.5 1.7 1 23 649 671 649 671 0.95 10 16 0.36 38 5.1 6.1 1 23 679 703 679 703 0.96 11 16 0.0048 0.5 11.1 0.6 2 23 708 729 707 729 0.96 12 16 0.00062 0.065 13.8 0.3 2 22 741 761 740 761 0.93 13 16 0.0011 0.12 13.0 1.5 1 23 769 791 769 791 0.93 14 16 1.3e-05 0.0013 19.2 3.5 1 23 797 820 797 820 0.97 15 16 4.4e-05 0.0047 17.4 0.2 1 23 826 848 826 848 0.98 16 16 0.0015 0.16 12.6 1.6 1 21 854 874 854 875 0.95
Sequence Information
- Coding Sequence
- ATGAATGAGCCGGAAAAAGCAAATAAAACAGAGGCAGACGCTGGACACTCTGCCTCTACAATGCTCGTCCAAATCACCACCGATAAAACTGGACCAAAACTCATCTGTCCAATTTGCAGCAAAGCAGTGATATCCCTGAATGGTTATATGAAACACATGAAGAAGCACGAACCTCCAGGAGGTTTCTGCTGCAACTACTGTGACGATCGCTTCTGCCTAGAGGAGCTTCTCAAGAAGCACAAGGATGAAAAACATAAAATCCTTGCTTGTCAGATCTGCCACGCTACATTCCCAACTGCCGATGAGTACCGAACGCACATCAAAGACGTCCATCAGGGCGTCGATAGACCGATGGCTGTTTGCAAGACATGTGGCGTGGAATTTAAGACCGCACAAGCTGCCAAGCGACACAAGGATACGAATTGCGGGCAAATTAAGCCCCATCCGTGTGATGAGTGTCCAATGGCATTTTATACGAAGTATAATCTAGCAGAGCACAAGAAGATTCATAAAGGAGAGAAGAAGTTTTGCTGCAGCTATTGTGGAAAGAGCTTTTTGAGCAACGGACGGCTTGTGATCCATGAAAGGAGTCACACCGGAGAGAAGCCTTATAAGTGTGATGTTTGTGGAAAATGCTTTGCGCATCGCGAAAGCATCGTGACTCACTCATCCATTCACACGGGGATTAAATTGGTTGCCTGCAAATGCTGTGGAGCGAGATTCTCATGTCATTCCAACCTCATCAAGCACCGACGGACACGACAGGACACATGCGGACTACCGATTTATGATTCAACCAAGGAAACCAAACGATCGAGGAATTCAAGAATCCCCGCTAGTCTAATGTCGTCGGAGATAAAAATAGTTCGAGCCAGCAAGGTTATAAACCCCAATGAGGAGCAGAAGAAGCAAACGAAGGCGAGTAAGGACCTCAAAAAAATAAATTCAGAACCGGAGCTCAAAAAAACTGATTCAGAACTTGAGCTCAAGAAATCAGATTCAGAATCTGAGGTTAAAAAAATGGACTCAACATTGGATCTCAAAAAAATAGATTCAGCGCCGGAGATGAAAAAAACAGACTCAGAACTTATAAAAACAGATTCAACACAGGAGCCTAAAAAAACAGATTCGAAAACGGAACTTAAAAAAACAGATTCAACGCTTGATCTCCAAAAATCAGCTTCAGCACTGAAGATTAAAAAGGTTGATTCAGACCTTGAGCTTAAAAAAACAGATTTAGCACCAGAGACTAAAAAAACAGACTCAGAACAACAAAAGGTTCAAATAGACACACAAAAAGACGTAACTAAGCCTCCAAGACGTAGTCAACGAATCGAAACGAAGACTTCTTCTACGGAAAGCGAAAATAAGACTCCCGCAGACGTCGAATCAGACTCAGACGACTACGCTGATCGCATTTTCGACAGTTCAAGTGACTCCGATGACTCGGATCAAGCTAAACACCAGGCTATCAAGTCTCCGGCTCCAACAGCCACCACAGTCAAAACAGAAGAAGAATTAAAACCACCAGAACCCGACATCTTCGCCGAAAAAGACCGTCTTCTAGATCACCTACTCTCCGATGTCGTCCCAGTCAAAGCCGAGCCTCCGGACGAAGTCAAAGACGAGTCACCGGATGAGAAAAAGACTAAACTGTCCTCATTGAAACCCTGCAGAGTTCTTATCCAACAAGCAAATATCCAGAATCCGAAACTCCAGCCGTCAATGAAAACCAAACTGAAGTTTAAACGTCATCGTTTGGCGTTGCGTGAGAAGCTGAGGTTTTTTAAGAAAGACCGAGTCTACGACTGTCAATTCTGCATGAAAGTCTATCACATCCGGAAGCCATACGAGAAACATCTCGTCGAACAGCACAAGAAAACAAACGATGAAGTTCGTGCGATCTTTCTGGAGGAGGACAATGACATTCCCAGTGATTTGGTGCATCGGTGTCCGATCTGTTCAAAGGTTTATCTCATGGCGAAGAGACTTAAGACTCATATAACTTATCATGGTCCCAATGGAACTTTAATCCACAAATGTCCGTGCTACTGCAAGCACTACTTCAGCACAAAAGAAGAAGCAATGGAGCATGCAAAAGTCAAGCACAAATCATCGATTCACTGTGGAGTTTGTGACAAATACGTGCAGTCACCAGAAGCACTGAAAACCCACAAACGTTCACACATCAAGCGCGGCAAACAAACAGACAGAAATCTAATCTGTGACAAGTGTGCTAAGTCCTTCGTCAGTCGGACGTCTTTAAACGACCACACACGGTCGAATTGTGGACAGAATCCACTGTATCATTGTAGCATTTGTGATAAGAAATTCACTACTGCGGGGATTTTAAAGACTCACTCACTCCTGCACCAGGATGAGACTCCGTATGTTTGTGACAAGTGTGGAAAGGCTTTCAAGATCCAGTCACAGTACAAGACTCACTTGAGACACAAACACTCTGAGGATAAACCATACAAATGCGAGCTCTGTCCAAAGCAATATCCCTACAGAGAGAGTCTTCTAACCCACATGGCCATCCATACTGGACTCAAGAGGTACTCCTGTAATGGATGCAGCAAACGATTCACATGCATTTCCAATCTTCAGGCTCATCGAAAGGTGTACGCAGACACATGTGGACTGCAGCCATTGAATTCAAAACCAAGTCAATACATTGGAATGCAGAAGGGTCATCTTTTGATGGGCACTAAGCCGACTTTCTAA
- Protein Sequence
- MNEPEKANKTEADAGHSASTMLVQITTDKTGPKLICPICSKAVISLNGYMKHMKKHEPPGGFCCNYCDDRFCLEELLKKHKDEKHKILACQICHATFPTADEYRTHIKDVHQGVDRPMAVCKTCGVEFKTAQAAKRHKDTNCGQIKPHPCDECPMAFYTKYNLAEHKKIHKGEKKFCCSYCGKSFLSNGRLVIHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGIKLVACKCCGARFSCHSNLIKHRRTRQDTCGLPIYDSTKETKRSRNSRIPASLMSSEIKIVRASKVINPNEEQKKQTKASKDLKKINSEPELKKTDSELELKKSDSESEVKKMDSTLDLKKIDSAPEMKKTDSELIKTDSTQEPKKTDSKTELKKTDSTLDLQKSASALKIKKVDSDLELKKTDLAPETKKTDSEQQKVQIDTQKDVTKPPRRSQRIETKTSSTESENKTPADVESDSDDYADRIFDSSSDSDDSDQAKHQAIKSPAPTATTVKTEEELKPPEPDIFAEKDRLLDHLLSDVVPVKAEPPDEVKDESPDEKKTKLSSLKPCRVLIQQANIQNPKLQPSMKTKLKFKRHRLALREKLRFFKKDRVYDCQFCMKVYHIRKPYEKHLVEQHKKTNDEVRAIFLEEDNDIPSDLVHRCPICSKVYLMAKRLKTHITYHGPNGTLIHKCPCYCKHYFSTKEEAMEHAKVKHKSSIHCGVCDKYVQSPEALKTHKRSHIKRGKQTDRNLICDKCAKSFVSRTSLNDHTRSNCGQNPLYHCSICDKKFTTAGILKTHSLLHQDETPYVCDKCGKAFKIQSQYKTHLRHKHSEDKPYKCELCPKQYPYRESLLTHMAIHTGLKRYSCNGCSKRFTCISNLQAHRKVYADTCGLQPLNSKPSQYIGMQKGHLLMGTKPTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -