Basic Information

Insect: Syritta pipiens
Gene Symbol: -
Assembly: GCA_905187475.1
Location: LR994571.1:6344318-6345424[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.037 3.9 8.3 0.1 1 23 47 70 47 70 0.87

2 9 4.4e-05 0.0046 17.5 0.5 1 23 146 168 146 168 0.98

3 9 1e-06 0.00011 22.6 2.4 1 23 174 196 174 196 0.98

4 9 9.3e-05 0.0098 16.4 2.0 1 23 202 224 202 224 0.96

5 9 8.2e-07 8.6e-05 22.9 1.6 1 23 230 252 230 252 0.99

6 9 9.4e-05 0.0099 16.4 4.3 1 23 258 280 258 280 0.98

7 9 0.00032 0.034 14.7 1.7 1 20 286 305 286 308 0.92

8 9 4e-05 0.0042 17.6 0.7 1 23 314 336 314 336 0.97

9 9 8.9e-06 0.00094 19.6 0.5 1 23 342 364 342 364 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.037	3.9	8.3	0.1	1	23	47	70	47	70	0.87
2	9	4.4e-05	0.0046	17.5	0.5	1	23	146	168	146	168	0.98
3	9	1e-06	0.00011	22.6	2.4	1	23	174	196	174	196	0.98
4	9	9.3e-05	0.0098	16.4	2.0	1	23	202	224	202	224	0.96
5	9	8.2e-07	8.6e-05	22.9	1.6	1	23	230	252	230	252	0.99
6	9	9.4e-05	0.0099	16.4	4.3	1	23	258	280	258	280	0.98
7	9	0.00032	0.034	14.7	1.7	1	20	286	305	286	308	0.92
8	9	4e-05	0.0042	17.6	0.7	1	23	314	336	314	336	0.97
9	9	8.9e-06	0.00094	19.6	0.5	1	23	342	364	342	364	0.98

Sequence Information

Coding Sequence: ATGAGCGAAGCAGGAAGCTCGAAGCTTTTCAAAATCGAAACCACCACTGACGATGACTGCTCGCAATCCGTCCACGAGCATTTCATTCCCGAAACAAAGTGTGGGGAAATCCTTCTGTTGGCGAATGCAAATTTTTGGTTTGTTTGCACTTTCTGTGATGAGCGCTTCGTTAATGTTGTCATATTTGTTAATCACATCAAGGGAGTTCACATTCTGGACACTAGTTCGACGAAAACGACGAATGAAGGCTTAGACGTCGATGACGAACGAGCTTCAGTGAAGTCGGAGGCGGAAAGTCAACCGAAGGCAGACATAGAGAAGGAGAACGATGGAGCAACAGTTCCGGAGGAGGATAAGTCTAATTGCAAGGACATTGAGGACCTACTGTCCGCTCGTGATAAAACCCCCAAGAAAAGAAATCGCAAAAAAACAAAATATGCCTGCTCGGATTGCATGAAGACAGTGCGTGATCGCAGATCGTTGGAAGACCATATGCGTTCACACACTGGAGAGACTCCATTTCAGTGCGAGGAGTGCGGGAAGTGCTACAAGAACATGTTCAATCTTAGGTCCCATCTGATCATCCATTCCGGAACACGTCCGTACAAATGTGAGTTGTGCAACGCTGGGTTTTCGCACCCGAACTCCCTGAAAACTCATCGTTTTCTGCATACTGGCGAACGTCCGTACAAGTGCGAACGTTGCGACAAAGCGTTCGTCACGAGCAGCAGCCGAAAGGTGCACATGAGACAGCATACGGGAGAGACACCGTTCGTGTGTGACCTCTGCGGGAAGGGCTACACCGTGAAGTGCCACTACGACAATCACATGCGGCGACACAACGATCAACGAGACTTCCTTTGTGACCAGTGTGATAAGGGGTTTTTCAATAAGGCAACCCTTATAAATCACATGGCTTGTCATTCGGACGAGAAGACTTTCGTTTGCGATGTTTGCCCGGTGAGATTTAGTCGAAGGAGAACACTGATGGAGCATAAGAAGCTGCATCTGGACGTGAAGCAGTATGTTTGCAAAGTTTGCAGCAAGGACTTTGCACAGTATGCGGGGCTCTATTCCCACATGAGATACCACAAGAGCAAGGAATAA
Protein Sequence: MSEAGSSKLFKIETTTDDDCSQSVHEHFIPETKCGEILLLANANFWFVCTFCDERFVNVVIFVNHIKGVHILDTSSTKTTNEGLDVDDERASVKSEAESQPKADIEKENDGATVPEEDKSNCKDIEDLLSARDKTPKKRNRKKTKYACSDCMKTVRDRRSLEDHMRSHTGETPFQCEECGKCYKNMFNLRSHLIIHSGTRPYKCELCNAGFSHPNSLKTHRFLHTGERPYKCERCDKAFVTSSSRKVHMRQHTGETPFVCDLCGKGYTVKCHYDNHMRRHNDQRDFLCDQCDKGFFNKATLINHMACHSDEKTFVCDVCPVRFSRRRTLMEHKKLHLDVKQYVCKVCSKDFAQYAGLYSHMRYHKSKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00310506;
90% Identity: -
80% Identity: -