Spip011857.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- ZNF212
- Assembly
- GCA_905187475.1
- Location
- LR994571.1:65189443-65192252[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.3 1.4e+02 3.3 0.4 1 12 68 79 68 88 0.83 2 13 3.6 3.8e+02 2.0 0.6 2 13 129 140 128 148 0.84 3 13 0.18 19 6.1 0.2 2 21 158 177 157 178 0.92 4 13 1.1e-06 0.00012 22.5 1.1 1 23 191 213 191 213 0.98 5 13 3.5e-05 0.0037 17.8 3.5 3 23 239 259 238 259 0.97 6 13 0.0001 0.011 16.3 1.6 1 23 284 305 284 305 0.98 7 13 0.00095 0.1 13.3 1.8 1 23 311 333 311 333 0.96 8 13 0.0033 0.34 11.6 1.1 1 23 352 374 352 374 0.97 9 13 6.5e-07 6.8e-05 23.2 3.8 1 23 380 402 380 402 0.98 10 13 0.0068 0.71 10.6 2.2 1 23 408 430 408 430 0.97 11 13 1.5e-05 0.0015 19.0 3.6 1 23 436 458 436 458 0.98 12 13 4.1e-06 0.00043 20.7 0.2 1 23 462 484 462 484 0.98 13 13 0.00023 0.025 15.2 0.3 1 23 496 519 496 519 0.96
Sequence Information
- Coding Sequence
- ATGTCAGAGTTCGTGGAAGTGCCCCACGACAATGAAATCATTGAAGAGGACTACATCATTGAAGAAATAGATGAACCTTTCTATGCGTTTGATGTGAAGGAAGAAGGCAACCAGTCGGCTGAGAGGGACATATTTTCCGATAACGATGAATATGCTCATATTGTGTGCTTGGGCAAGGACGACAGCACAGGCGAGGAGGTGTATCATTGTGCGCTGTGCAACGTCACATTCTCGTCAATTGAGACCCATTTGAAAGAAAACCACCCAAGTACTCCTCAGGACACTGAAGAGACTGTACAGCTTTTCGCACAGGACGGTGAAGATGAGGGCAGTGCATCGTCGGAGGTCAATCAGCAGGAAGTGGAAGATGGAACAACTAGTATAGTTTGCCAGACTTGTAATTTTGTATTCGAGACAATGGACGACGCAGAATTTCATCAATGTCAAGTAGAAAATCTAAATCAGCCACTCATGTGTAATAACTGCCAAGTGATATTCGATAACGAGGCAGACATCGAAACGCATCAGTGCTCACCAGTTGAAGTGAAGGAAGAGTTTATCACATCGGTGTTCTCCTGTCCTGAGTGTGAGAAGAAGTTCTCTTCGATCAATCTGCTCCAACAGCATCAGAAGACGCATAAACTGAAAAAACATGCTGTAAAAAAGGTTAAAAAGGAAGGCGAAGACAAATGTGATGGAGGTCCGCAAAACCATTGCAGCATTTGCAACACAACATTTTCCTCGTCCAAGAACTTAAAATTACACGCGAAAATGCATCTCTCAATACCCACAAAGACGATTAAGGATGCTATGCCGATCGGAACCGACGATTCAAGCGACAAGAACCAGTTTTACTGCGAAATTTGCAACAAGAGCTTTGATCATGCCCTACTCTCGGTTCATCAAAACATGCACCAGAATGTTGAGGAACATAACTGCAGTATATGTAACCGCCAATTTGAGAATCAAGTCAGCTACGACATGCACATGCAGTTGCACTCTTGTCAACCAACCCGTGTGCGGCCACAACGAGTGGCTAAACCTGGAGCACGATTTGCTTGCAACTACTGCGGAAGAGAATTCCTAAGGCCACACGAAAAAGTAAAACATGAACGAATTCACACAGGTGAAAAACCACACGAATGCGAGGTGTGCGGAAAATGCTTTCGCGTTTCATATTCGCTCACGTTGCACTTGCGAACTCACAGCGATGTGCGGCCATTTGTTTGCGCCCAATGTAACAAACGTTTTAAAGCATATGCAGTGTATTCTCACCATCTAAACACCCACTCAGAAGACCGTCCATACAAGTGCCAGATGTGTCCGAAATCTTTCCGCACCTCTGTGCAGCTCTGTGGGCACAAGAATAGCCACACGAAACCATATAACTGCCCAGAATGTAACAGACCTTTTGCTAGTCTCTACGCGGTCAAGATGCACATGAAAACCCACAATAAAGCTAACAAATCTAACGAGAACCTCAAGCACCGATGCGGGATTTGCGGTGCCGTATACGCACGAATGTTTGCTTTACGCTTACACATGAAGGAGCAGCACTCAGCTGACTTAATGGAGGACCAGGGAAAAGATCTCAATGTAGACAATGCCCCGCCCATCACTGCAGATGATTGCTTCAACGAGGACGAAGTCTCCACTCAGGCCATCTTGCAGGGAGAAGAAATAATCATCGACAACTTTCACACAGAGGAAATCGTGACGGACTGGCTAACGAGCAAGTAG
- Protein Sequence
- MSEFVEVPHDNEIIEEDYIIEEIDEPFYAFDVKEEGNQSAERDIFSDNDEYAHIVCLGKDDSTGEEVYHCALCNVTFSSIETHLKENHPSTPQDTEETVQLFAQDGEDEGSASSEVNQQEVEDGTTSIVCQTCNFVFETMDDAEFHQCQVENLNQPLMCNNCQVIFDNEADIETHQCSPVEVKEEFITSVFSCPECEKKFSSINLLQQHQKTHKLKKHAVKKVKKEGEDKCDGGPQNHCSICNTTFSSSKNLKLHAKMHLSIPTKTIKDAMPIGTDDSSDKNQFYCEICNKSFDHALLSVHQNMHQNVEEHNCSICNRQFENQVSYDMHMQLHSCQPTRVRPQRVAKPGARFACNYCGREFLRPHEKVKHERIHTGEKPHECEVCGKCFRVSYSLTLHLRTHSDVRPFVCAQCNKRFKAYAVYSHHLNTHSEDRPYKCQMCPKSFRTSVQLCGHKNSHTKPYNCPECNRPFASLYAVKMHMKTHNKANKSNENLKHRCGICGAVYARMFALRLHMKEQHSADLMEDQGKDLNVDNAPPITADDCFNEDEVSTQAILQGEEIIIDNFHTEEIVTDWLTSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -