Spip004464.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- -
- Assembly
- GCA_905187475.1
- Location
- LR994573.1:9981204-9989040[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.1 1.2e+02 3.6 0.1 2 12 5 15 4 17 0.88 2 13 0.011 1.2 9.9 1.1 1 23 335 358 335 358 0.94 3 13 1.8 1.9e+02 3.0 4.3 1 23 367 389 367 389 0.98 4 13 3.6e-05 0.0038 17.7 1.6 1 23 396 418 396 418 0.98 5 13 5.2e-05 0.0055 17.2 0.5 1 23 424 446 424 446 0.95 6 13 3e-05 0.0032 18.0 1.2 1 23 453 475 453 475 0.98 7 13 2.7e-05 0.0028 18.1 0.4 1 23 481 503 481 503 0.97 8 13 5.6e-05 0.0059 17.1 0.3 1 23 509 531 509 531 0.98 9 13 1.3e-05 0.0014 19.1 0.5 1 23 537 560 537 560 0.95 10 13 3.6e-05 0.0038 17.7 3.7 1 23 566 589 566 589 0.97 11 13 8.7e-07 9.2e-05 22.8 2.7 1 23 595 617 595 617 0.98 12 13 0.00026 0.027 15.0 0.4 1 23 623 645 623 645 0.96 13 13 0.00038 0.04 14.5 0.6 1 22 651 672 651 675 0.92
Sequence Information
- Coding Sequence
- ATGGATTTTTTGAAATGTTTTCTCTGCGATAGAGTTTTTGTTGATGGTGATGAACCATGGCATTTATTTGAGAAGAGGCTCTTGACAAATGGCCAGACGGATAGTCCATTAGCTGCTATTTTATCCTCAGCTCTGGGAAAAGAGCTCGAACAGGAGTCTGTCCATTCCAAGTTGCTGTGTGATGACTGCAACTTCATTGTTCTCGAATACGAGAGCGTAGAGAAGCAATTCTATCAGGTACGACTGAAAATCCTCACTGAGTACCAAAACACTGCCAAGGAGAATGGCCTCGACCCAATTTGGTTTGAGGTCAGCTACGTGGATGAGTGTCCTCAAATTCAGTCGCAGACTGTCAAGAGTGGAGAGGAGCCGTTGGGCGAAGTGGGGCTGGTCAAACTGGAGAAGGATGTGGTCCAAACGATTGTTGACCACCTTCCGATACTGGACAGTCAAGAGATCTCGAATTTTGTTGTGGAGGACGTGCAGGACGAGCAATATCAGGAGAGTGTTGTCGAGGAGTTCAAGGGGGACACAGCTGTGATTACAAACGAGCCGCAAGTGGTTGAAGAGGACGACGAGGAGGATGAGGAAGAGGTCGTAGACGAGAGCGGCGCGTATGTCGAGAGGAACATTCAAGTTATGGGTGAAGGTGCGTATCAAGTTGAAGAACCTGTTGGACAGATCACATACGAGGAGCAAATAATTGAGCAGAATTCCGTGATAAGCTACGACAACAGTGTTGATGCCGCTGAATCAGCTATCGGCTACAACAGCAGCAATGAAGAAAAGTCAGCAGCAACAATGCCAGACGACGAGAACATTCCAAAGCCGACGAAACAGAAGCGTTCAGCACGTGCAATCCGCGAACAGCAACGAAACTTCGAGCTCCTTGGGTTTGAATTCGTCGACAACATGTACATCTGTCTGTTGTGTCCAAACCGTCCTGACTATTTGCCGATGATGTTCTCGGCTCACCTGAAGGCCGAGCACAACTACAAGTTCTACGTGTGTGACGTCTGCTACAAGGGATTCCACAAACGGAACGAGATCAGTAAGCACATGGACGAGGAGCATGGCGGCGGAGCAGAAGAAGGCGAATTTAAGTGTGAGACGTGTATGCGTGTGTTCCTGAATCACCGTCTGTTCCGGATTCACAAGCGCCTCCACTACAGCTCGAATAAGCAGCACGAATGCCCGGAGTGCTACAAGAAGTACAGTTCGAAGAATCTGCTCGATGAGCACATGAATATGCACACGGGGAAGCGTCCGTACAAGTGCATCTCGTGTGGGAAGGATTTCGCGTCGAAGTACACGTTGCAGGCGCATTTGAAGATCCACACGAAGCGGCCGAGGCCGTATCAGTGTGACGAGTGCGACAAGTCGTTCCTGAATCAGCAGAATCTAGTGCAGCACAAGAAGCTGCATTCGGGGCTGAAGTCGTTTGTGTGTGAGATTTGCCAGAAGGCGTTTGGGACGCAGCACAATTTAGACGTCCATAAGATCGTGCACTCGGGGAATAAGCCGTTCATCTGTCGGACGTGTGGAAAGGGATTTGCACGCCGCGCTGAGATTCGGGATCATGAGAGAACTCACACGGGGGAGAGGCCGTTTAAGTGCGACTTGTGTCCGATGGCGTTTGCCCAGAGGTCAAACCTGATGACGCACAAGAAGGCGACGCATTTGAACGACAAGAAGCACAAGTGCAACCTGTGCGATCGGTCGTTTAAGCGGCGGCGGCTGCTGGAGTACCACACGCAGTCGGCGCACACGGGAGAACGACCGCACAAGTGCGACGTGTGCGGAGCGACGTTCGTCTACCCGGAGCACTTCAAGAAGCACATGCGGATCCACTCGGGCGTCAAGCCGTACGCGTGCGAGGTCTGCGGGAAGCTGTTCAATAGCCGGGACAACCGGAACGCCCACAGGTTCATCCACAGCGAAAAGAAGCCGTACGAGTGTCTCGAGTGTGGAATGGGATTTATGCGGAAGCCGCTGCTGCTGGCGCACATGAAGCACACAAAGCACGCGAATGACACGATTATCGTGAATCAGCCGCAGATTACGCACAAGGGCGTGGTGGAAGTGAAGAAGGAGTCGGCCGAACAGCAGCTGAGCCTGAGCAGCCGGAACATCTCGGAGTGCGTCGTCAGTGGGGCTGAGTACGACGAGGTCGTCACGTCGGACACAATTCTGGTGGAAGATGGCGATGGGCAGTACATCAAGGACGAGGATGGAGAAGTTAAGTATTTGCAGTTCACCGAAATGGACAAGGACGGGCAGGCTACGTTCACCTGGGTGGACATTGGCGAGGATAAGGAGGACGAGAATTAG
- Protein Sequence
- MDFLKCFLCDRVFVDGDEPWHLFEKRLLTNGQTDSPLAAILSSALGKELEQESVHSKLLCDDCNFIVLEYESVEKQFYQVRLKILTEYQNTAKENGLDPIWFEVSYVDECPQIQSQTVKSGEEPLGEVGLVKLEKDVVQTIVDHLPILDSQEISNFVVEDVQDEQYQESVVEEFKGDTAVITNEPQVVEEDDEEDEEEVVDESGAYVERNIQVMGEGAYQVEEPVGQITYEEQIIEQNSVISYDNSVDAAESAIGYNSSNEEKSAATMPDDENIPKPTKQKRSARAIREQQRNFELLGFEFVDNMYICLLCPNRPDYLPMMFSAHLKAEHNYKFYVCDVCYKGFHKRNEISKHMDEEHGGGAEEGEFKCETCMRVFLNHRLFRIHKRLHYSSNKQHECPECYKKYSSKNLLDEHMNMHTGKRPYKCISCGKDFASKYTLQAHLKIHTKRPRPYQCDECDKSFLNQQNLVQHKKLHSGLKSFVCEICQKAFGTQHNLDVHKIVHSGNKPFICRTCGKGFARRAEIRDHERTHTGERPFKCDLCPMAFAQRSNLMTHKKATHLNDKKHKCNLCDRSFKRRRLLEYHTQSAHTGERPHKCDVCGATFVYPEHFKKHMRIHSGVKPYACEVCGKLFNSRDNRNAHRFIHSEKKPYECLECGMGFMRKPLLLAHMKHTKHANDTIIVNQPQITHKGVVEVKKESAEQQLSLSSRNISECVVSGAEYDEVVTSDTILVEDGDGQYIKDEDGEVKYLQFTEMDKDGQATFTWVDIGEDKEDEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -