Spip014031.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- salm
- Assembly
- GCA_905187475.1
- Location
- LR994571.1:100041701-100052974[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.4e-06 0.00015 22.2 1.7 1 23 287 309 287 309 0.98 2 9 1.6e-06 0.00016 22.0 1.7 1 23 315 337 315 337 0.98 3 9 1.4 1.4e+02 3.3 2.5 5 23 555 573 552 573 0.85 4 9 7.7e-08 8.1e-06 26.1 0.2 1 23 579 601 579 601 0.98 5 9 0.00061 0.065 13.9 0.9 1 23 611 633 611 633 0.98 6 9 1.1e-05 0.0012 19.3 0.2 3 23 786 806 785 806 0.98 7 9 0.00072 0.076 13.6 4.5 1 23 812 834 812 834 0.97 8 9 3.3e-06 0.00035 21.0 3.0 1 23 939 961 939 961 0.96 9 9 5.3e-08 5.6e-06 26.6 0.7 1 23 967 989 967 989 0.98
Sequence Information
- Coding Sequence
- ATGTGCTCAATTTTTCACAACCGAATTAATTACCGAGGTCCTAGGAGTGGGAATGGCGCTGGCGGTGGAGGCACCCCCACCCCCACGGCCGCCAATGAGCCATCGTCCATCAAGGATGACCCAGATCGGAATAACAACAGCGGAGGCGACGGGCCAGATCCCCGCCAGAGCGACGAGGAGGATGACGAGGAGGACAGCGTGGAGGAGGCGTTGGACCTATCGGTGATGTCACGTCTGCCGGCCACCGGACACGTTGCCCTTGAGGCGCTGCAGCACACAAAGGTGGCTGTCGCGCAATTTGCCGCCACCGCCATAGCCAACTCGCAGAACTATGACGAGGCGGTGAGCGATCTGGCGGTGGTGCAGTCGACGATATTCAACGTGCAGCGCCAGCAGCTTATGCAGATGCAGCTGATACAGCACCTGCAGTCGCAGCTCAAGCACCGCACGGACGAGGATTATGATGATGAGGAGGAGCGGGACGATGGAGATGGGGACGGGGGCGGGGACGGGAACATACCTCGCCAGAGCATTGATCAAATCCCAGAGAAAGAAAAGACTGAAATCAAAGAGGAAGAGAAGCCGAGCGGGGAGCAGGAGCCCGAGCCGGAGCAGGAGCAGGAGTGCACGAAGGCATTCCAACCGCACCTGTGTGACATCAGTTCATCATTTGCCTCGAGCATTATCACCAATCACGACCCTCCTCCGCCGCCCAACGAGCCCAACTGCCTGGAGATGCTGCAGCGGAGAACCGAGGAGGTGCTGGACTCGGCCTCGCAGAGCGTGCATGCGAACAACTTGAACGACGAGTACGAGTACTCGAAGAAGGACGGCCAGGGCCGGGGCGAGATCTTCAAGCACCGCTGCAAGTACTGTGGGAAAATCTTCGGCTCCTACTCGGCCCTGCAGATCCACCTGCGCTCGCACACCGGCGAGAGGCCCTTCCAGTGCAACGTCTGCGGCAGCAAGTTCACCACCAAGGGGAACCTCAAGGTGCACTACCAGCGGCACACTCAGATCTTCCCGCCCATGCTGATGCCGCCGTCAACGAGCGCGGAGCAGTATCCTCCGTACCACGCCGCCATGGTGCCGCCGGTCTCCTCGCCCGCAAATCCTCCGCCTCCGCTGCGTCTGCCATTTCCGCCGTTCGTTCAGATGCCTCAGTTCCGCATGGGCTCCTCCCCGACGCGGGAGAAGGAGCCGCCGCCTGTGATGGAGAAGAAGGCGCAGCCCCAGCCGCAGACGGAGGCCCAAGACCTTAGGAAACCCGCAGCCGGGGAGGACGAGAGTCGTGTGCGTGCCGTGGAAGAGAAACCAAAGAAGGAGCCGGTGAAGTTGCAGGAAACGCCCATCCCTCCGCCCAGCAGCAGTCGGCGGAAGCGGGCCGCGAGCCCCCGGGAGTCACACCCTCCGCCAGTGAAGCTGCCGGACGACGCCACCCCGGAGAACCTGTCTAAGACGTCGCGGCGGTCGTCCCTGAGCCGCGGCTCGGCTACCAGCCTCGAGCAAGTCCCCTCCGAGTACTCGCTCGCGCAGATGGAGCGGCTGATCGACAAGTCCTGGGAGGACCTCATCGAGATCGACAAGACGTCGGAGACGTCGAAGCTGCAGCAGCTGGTGGACAACATCGAGAACAAGCTCACAGACCCGAACCAGTGCATCTTCTGCCAGAAGGTGATGTCCTGCCGCAGCTCCCTGCAGATGCACATCCGCACCCACACCGGCGAGCGGCCGTTTCGGTGCCGCATCTGCGGCCGAGCATTCGCCACCAAGGGCAACCTCAAGGCCCACATGAGCATCCACAAGATCAAGCCGCCCATGCGCAGTCAATTCAAGTGCCCCGTGTGCCACCAGAAGTTCTCGAACGGCATCATCCTGCAGCAGCACATCAGGATACACACGCTGGACGACGGCGAGGGCGACCGGTCGAAGACCAACGAGATGATCAACACCGAGGACCAGAGCTCGACCAGGTCGATAAGCACCTCGGACAACATGGACTTTTCCCAGTCCGAGTACTCCGGGCAGAGGTCGGAGTCGTCACAGGGCGACTTTGATGACTTCACCATGGCGAGTGAGGAGGAGTCTCCGAATGAGACGAACCACTGCGAGGAGCGACGCGAGGAGAAGGAGCGAATAGAGGAGTCCGAGGCGGGCAGCAACTCGGATGAGAACGGCGCCATGGATCTGTCTGCAAAGGGTGTGGATGGAGAGAGGGCGCCTGAGAACGCCGGCGTCAGTTTGGTTCCGAACTTCCTACTCATGGCTCGAGACAATCGCAGCTCACCCAAGTTCCCGCTGCTGCCGTTCGGACCGCTAGGAATTATTGCTGGTCTTCGTGGTGCAGCAAATATCTGCAACATATGCTTTCGTATCTTTTCTAATCCATCTGAACTGGATCTTCACATTCGTACTCATACCAAAGAGGATAACTTCAAGTGCTCCATCTGTGATAAAGGCTGTGCCACAAAAGAGGAATTCCATCATCACATTCTGGCTCACAGATTTTGTCGAGATTCTGAGGATTCCAGTAACAATCAAAATTCGTATAACTTCTCCAGTGACGAGACCCAATTAGAGCCGAGTCAAAGAATCTTTAAGCCTGACTTAAACACAAGCGATAATCAAAAGCCCTTATCCCCCACCGGGGCCGGGGAGTCATCGTCAACAGTGATTTCCGAGAACAACATTGGGGGCGATGCTGAACATTCCCTGATGAAGATGCAACTTCACACGACACGATTCACTCCGAATTCCCTGCTGAAGCAGCAGGAACTCCAGCAGAACTCCCAAGAACAGCCTGCGAACAACAAGCACTTCTGTACGGTTTGTCGGAGGAACTTCAGCTCGAGCTCTGCGCTGCAGATCCACATGCGAACGCATACCGGGGACAAGCCGTTTCAGTGCAACGTCTGTCAGAAGGCCTTCACGACGAAGGGAAACCTGAAGGTTCATATGGGCACCCACATGTGGACGAATCCAGCTTCGAGGCGCGGTCGTCGCATGTCGCTAGAACTCCCCATTCACAGGCCCAACATGCCACCGTTGGGCAGTCACCAGGAACCTGACCTCTTAGCTCGACGGCCAGAGATATTCTTCCCCTACTTACCGCCGTTCTTCAATGGTCTTCAACCAAAGCCTGTTGACCTCCCATCAGGATCATTCCCGGGCCTCCCGCCGCCTCCATTCCCAAATGGCAGTACCCACAAGTACTCCGACATCATGGGCTTTGCACCATTCCTAGGACCCCCCTACAACTTCCCACCACTAGCAAACTTGGATCAGCAGTTGAATAAATCGCCTCCGAATGAGAAGTACCCACAAAGTCCACGCGATAGTCCAACCAACCATCAACCGCAGATTTCGGTGAAAAAGGACTTTCATCACGATGAGTTCGTTAAGGGATGA
- Protein Sequence
- MCSIFHNRINYRGPRSGNGAGGGGTPTPTAANEPSSIKDDPDRNNNSGGDGPDPRQSDEEDDEEDSVEEALDLSVMSRLPATGHVALEALQHTKVAVAQFAATAIANSQNYDEAVSDLAVVQSTIFNVQRQQLMQMQLIQHLQSQLKHRTDEDYDDEEERDDGDGDGGGDGNIPRQSIDQIPEKEKTEIKEEEKPSGEQEPEPEQEQECTKAFQPHLCDISSSFASSIITNHDPPPPPNEPNCLEMLQRRTEEVLDSASQSVHANNLNDEYEYSKKDGQGRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFQCNVCGSKFTTKGNLKVHYQRHTQIFPPMLMPPSTSAEQYPPYHAAMVPPVSSPANPPPPLRLPFPPFVQMPQFRMGSSPTREKEPPPVMEKKAQPQPQTEAQDLRKPAAGEDESRVRAVEEKPKKEPVKLQETPIPPPSSSRRKRAASPRESHPPPVKLPDDATPENLSKTSRRSSLSRGSATSLEQVPSEYSLAQMERLIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCRICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTLDDGEGDRSKTNEMINTEDQSSTRSISTSDNMDFSQSEYSGQRSESSQGDFDDFTMASEEESPNETNHCEERREEKERIEESEAGSNSDENGAMDLSAKGVDGERAPENAGVSLVPNFLLMARDNRSSPKFPLLPFGPLGIIAGLRGAANICNICFRIFSNPSELDLHIRTHTKEDNFKCSICDKGCATKEEFHHHILAHRFCRDSEDSSNNQNSYNFSSDETQLEPSQRIFKPDLNTSDNQKPLSPTGAGESSSTVISENNIGGDAEHSLMKMQLHTTRFTPNSLLKQQELQQNSQEQPANNKHFCTVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPASRRGRRMSLELPIHRPNMPPLGSHQEPDLLARRPEIFFPYLPPFFNGLQPKPVDLPSGSFPGLPPPPFPNGSTHKYSDIMGFAPFLGPPYNFPPLANLDQQLNKSPPNEKYPQSPRDSPTNHQPQISVKKDFHHDEFVKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00389819;
- 90% Identity
- -
- 80% Identity
- -