Basic Information

Insect: Syritta pipiens
Gene Symbol: -
Assembly: GCA_905187475.1
Location: LR994574.1:52341116-52347336[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 6.4e-07 6.8e-05 23.2 2.1 1 23 224 246 224 246 0.98

2 9 9e-09 9.5e-07 29.1 2.4 1 23 252 274 252 274 0.98

3 9 2.5e-05 0.0026 18.2 0.4 1 23 280 302 280 302 0.98

4 9 2.8e-06 0.0003 21.2 0.9 1 23 308 330 308 330 0.98

5 9 6.6e-05 0.007 16.9 1.4 2 23 423 444 422 444 0.96

6 9 2e-09 2.1e-07 31.1 1.6 1 23 450 472 450 472 0.98

7 9 0.0012 0.13 12.9 0.7 3 23 480 500 478 500 0.98

8 9 9.9e-05 0.01 16.4 0.8 1 23 506 528 506 528 0.99

9 9 0.0058 0.61 10.8 0.8 1 23 534 558 534 558 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	6.4e-07	6.8e-05	23.2	2.1	1	23	224	246	224	246	0.98
2	9	9e-09	9.5e-07	29.1	2.4	1	23	252	274	252	274	0.98
3	9	2.5e-05	0.0026	18.2	0.4	1	23	280	302	280	302	0.98
4	9	2.8e-06	0.0003	21.2	0.9	1	23	308	330	308	330	0.98
5	9	6.6e-05	0.007	16.9	1.4	2	23	423	444	422	444	0.96
6	9	2e-09	2.1e-07	31.1	1.6	1	23	450	472	450	472	0.98
7	9	0.0012	0.13	12.9	0.7	3	23	480	500	478	500	0.98
8	9	9.9e-05	0.01	16.4	0.8	1	23	506	528	506	528	0.99
9	9	0.0058	0.61	10.8	0.8	1	23	534	558	534	558	0.95

Sequence Information

Coding Sequence: ATGGCGATAAATTTTCCGGCATCATTTGCGGCATGCATAGCTGCGGGTCTCAAAGTGCCACGACAAATAATGTACTGCATATCACAGGACACGGGTCAGCCGTATGTCGATCAGTCGCGCGACAACGGTGCCAATGTCCGTCAGCAGCAGCAGCAGGGATCGCCGTCGACGAGTCCGTATCCGCAGCGATCGAACGGCGGTGAGGAAGACGTGGCCATGAGTCAGGTGGCTGGAATGCAGCAGCAGCAACAGCAGCAGAATGCCGCACAACAACAGAACCCAAACCAAAGTACCAACGATCCACAACCGATATCTGTCGATCCGGCGTCAAATAACCAAGCACAGCAAAGCAATGACCAAACCTTTAATCCACCGCAGGGAGCCGAGCTCGGCTACTATGCGCCCCGACACCCGGGCGGGACGATGCTGGCGCCACCGGGCTTCCCGCCGCTGCAGCACTATCTCAATAAGCCAGTCCTGCCGGGTATGACCGGCTCGATGGATCAGAACGGCGGTCTTGAGGCGTACGCAATGCCTGATCTCCTGCCTGGCGGTGGTGCGGGCGGTGCTGGCACCGGAACCGGTGCCCACGGTGGAATGCATCAAAACGCCACCGCAACCCCGACGCCGACCACACACAAAACGAAACCGCACAGCGATCTGCGACTCTTCAAGTGTACAACCTGCGGCAAGGACTTTAAGCAAAAATCAACGCTGCTGCAGCACGAACGCATCCATACGGACGCACGGCCGTATCCCTGCTCGGAGTGCGGCAAAAGATTCCGTCAGCAATCACACCTCACTCAACACCTGCGCATCCATGCCAACGAGAAACCATTCTCATGTGCGTATTGTCCACGCAGTTTCCGGCAACGAGCGATCCTCAATCAGCACATTCGCATCCATTCGGGTGAGAAGCCCTACGCATGCCCAGAGTGCGGCAAGCACTTTCGCCAGAAGGCCATCCTCAATCAACATGTGCGCACCCACCAAGATGTCTCCCCACATCTCATCTTTAAGAATGGTCCCCATCCAACGCTGTGGCCACAAGATGTACCATTTCCCGGTGATGAGACTGACACAAAGAATGACATTACTGGCTATCAGGATGATGGTTCCCAAGGAACACCCGAATCGAGAGCCTGTTTCTCACCCGATGGCAATGGTGGTATGCATTATCCTTCATACTTCAAAGACGGCAAAGGGCAAAAAATGCTGCCCGATGTCATACAACATGGTCGTGCAGCTGGTATGCCACTCTATGTGAGATGTCCGATTTGCGAGAAGGAATTCAAACAGAAGACAACACTCCTGCAGCACGGTTGTATACACATCGAGTCGAGGCCGTATCCATGCCCCGAGTGTGGCAAGCGATTCCGTCAGCAGTCACATTTAACGCAACACTTGCGGATACACACGAACGAGAAACCATTTGGTTGTTTGTATTGTCCGCGTTTCTTCCGTCAGAGGACTATTTTGAATCAGCACATTCGAATCCACACCGGAGAGAAGCCGTACAAATGTGCACAGTGTGGCAAAGATTTCCGGCAAAAGGCGATACTGGATCAACACACAAGAACACACCAGGGCGATCGACCGTTCTGTTGTCCGATGCCGAATTGTCGGCGAAGGTTTGCCACCGAGGCGGAGGTGAAGAAGCACATCGACAACCACATGAACCCGCACTCATCGAAGTCGCGTCGTCAAGTGAATCACATGACGAACGAGGCAAAGAATGCAGCCGCAACAGCCGCTCAATTCCTCACGAACATGGACAACAAAACCAACATAATCCCGCGTATGGGTCCAGTGGTCAAGCACGAGCTCTACTTTCCACAGTGCTACGGCGCTCCTTTCAATCAATCGTTCGGTGCCCAGCAGCAAGGTCAGGGCCAACCAGGGCAACCACAGCAACAGCAACCAGTCCAGCAGCAACAGAAGCAACAGGGCCAGCAGCAACAACCGAATTCAGGGCACAATGGCAATTCGGCACCGCCGAACGGTGCCACAGGCGCCGGCGGCACGGTGGTCACAGTCGCGAATTCCGTAGCACCCGCTCTACCTCCACCACCGGCAGCGCCACCACCACAGTCTGTGCAATCGGCATCAGTGCATTTGCCAGCGCCTCAACCCCAGTCAGCGTCTATAGTTCCCGTGCCCACAGCAGCGATCTCAGCGGCAGCAGCAGCTGCTGCCGCAACTGCTCACACCGTAACATTATCTATATCATTACCGCCCTCAGCATTACCTCAAGGCGCCACAACGAATGGTGTCGGCGGTGGTGGCGGGGCGCATGTTCTAGCACCGCCTCCAACATCAACAACAGCACTTCTTCCGCCGCATTCTGTTGCGCCATCGACGACGATATCGCATGCGATTCCCATTCATCCTCACATTCACTCAATATTCGGATCTCTATGA
Protein Sequence: MAINFPASFAACIAAGLKVPRQIMYCISQDTGQPYVDQSRDNGANVRQQQQQGSPSTSPYPQRSNGGEEDVAMSQVAGMQQQQQQQNAAQQQNPNQSTNDPQPISVDPASNNQAQQSNDQTFNPPQGAELGYYAPRHPGGTMLAPPGFPPLQHYLNKPVLPGMTGSMDQNGGLEAYAMPDLLPGGGAGGAGTGTGAHGGMHQNATATPTPTTHKTKPHSDLRLFKCTTCGKDFKQKSTLLQHERIHTDARPYPCSECGKRFRQQSHLTQHLRIHANEKPFSCAYCPRSFRQRAILNQHIRIHSGEKPYACPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGPHPTLWPQDVPFPGDETDTKNDITGYQDDGSQGTPESRACFSPDGNGGMHYPSYFKDGKGQKMLPDVIQHGRAAGMPLYVRCPICEKEFKQKTTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPFGCLYCPRFFRQRTILNQHIRIHTGEKPYKCAQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEAEVKKHIDNHMNPHSSKSRRQVNHMTNEAKNAAATAAQFLTNMDNKTNIIPRMGPVVKHELYFPQCYGAPFNQSFGAQQQGQGQPGQPQQQQPVQQQQKQQGQQQQPNSGHNGNSAPPNGATGAGGTVVTVANSVAPALPPPPAAPPPQSVQSASVHLPAPQPQSASIVPVPTAAISAAAAAAAATAHTVTLSISLPPSALPQGATTNGVGGGGGAHVLAPPPTSTTALLPPHSVAPSTTISHAIPIHPHIHSIFGSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01044903;
90% Identity: -
80% Identity: -