Spip019186.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- -
- Assembly
- GCA_905187475.1
- Location
- LR994572.1:79761171-79764699[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.9 4.1e+02 1.9 0.1 2 15 75 88 74 91 0.80 2 13 0.00032 0.034 14.8 4.3 2 23 228 250 227 250 0.96 3 13 0.32 34 5.3 4.3 2 23 256 279 255 280 0.77 4 13 3.4e-05 0.0036 17.8 3.2 1 23 284 306 284 306 0.99 5 13 9.9e-07 0.0001 22.6 3.0 1 23 312 334 312 334 0.97 6 13 1.1e-07 1.2e-05 25.6 1.8 1 23 340 362 340 362 0.98 7 13 3.1e-05 0.0033 17.9 0.6 1 23 368 390 368 390 0.98 8 13 0.00015 0.015 15.8 3.1 1 23 396 419 396 419 0.97 9 13 2.1e-05 0.0022 18.5 1.1 1 23 431 453 431 453 0.99 10 13 0.00071 0.075 13.7 0.7 1 23 460 483 460 483 0.88 11 13 1.6e-05 0.0017 18.8 0.7 1 23 489 511 489 511 0.95 12 13 4.8e-05 0.0051 17.3 2.0 1 23 517 539 517 539 0.97 13 13 6.5e-05 0.0068 16.9 0.6 1 23 545 567 545 567 0.98
Sequence Information
- Coding Sequence
- ATGTCGATTAACATTTGCTTGGAAGAAATCTCCTTTCTAGAGAAAACATGCCGAGCTTGCAGTCGATACGACCCAAATGATTCCATGACATTTCATCCGATTTTCAATGATGGCAGCAGCGACACCACCACAGATCAGGCCAGTGTCGTAGTGGCAGGGGTTTTTGAGGAATTTCTTATTTGGAATTTAGAGATAAAACAAAACGATGGGTTACCCCAACAAATGTGCAATGATTGCTTGGAGAGATTTGTCCAAGTGAAACTATTCCGTGAGGAAGTTCTTGACTCTCAGCGGCTGCTGACGTCGTACATAAGCGGCCGTGAGGATGGTAGTGCGATGATAACAATTGAGACGCTGCCAATGTCGGCGGACGGTGGCGATCGGATTGGATACATTTCGCCCAGCAAGTTGATTGAGTACGTGGGTTCGGAGGAGGAGAATTGCGAGGAGAGCTCCACGATGGCAAAGAGCTCAAATGAAATCGATTATTTCGAGGAGAATGAGAGTGATTTTCTGTTCAATCATCCGAACCAGATTGAGACGAGCGATTTGAGGGATTTCAAGGCGGACAATCCAGAGCCGAGCAGTTGCAGCAAAACCTTCGAGGAGCAGTCTGTGGACGACGAGATTAAGACCGTTGAGCCAGAGTCGGAAACCGCTGGCAGTGGTAGTGGTGGAGTTAAGTGCGAGATATGCCTGAAGATTTTCCGAACGGAGCATCATCTGCTGCGGCATAAGCGACTGTTCCACAGTCGGACGGATTTGACGTGTCCCATTTGTGGGAGGAAATTCGAGAAGATCACGCAGAGGAACTTCGATTATCACCTACGGTCGCACCACGAGAAAAAGTACAAGTGCGCGTATTGTGAGAAGAGCTTCCAGCAGAAGATTCACATGATCAATCACGAGAGGACGCACACGAAAGAGAAGCCGTTCGCGTGCAAAGTTTGTGGAAAGAAATTCCGTCAGCAGTGCAGCTTGCAGGAGCACTTGATGACGCACAAAGACTCTCATCCGTTCAAATGTGACATCTGCGGAAAAGGTTTCACTCATCGATCCGGTCTGCGAATGCATTTGCGTCTCCACAGCGGCGTCAAACGTTACCAGTGTGAGTTCTGTGGCGAAGGATTCAATCAAAAAGCGCACCTTGATCTGCATGTGATGAACCATACCGGTGAGAAACCCTTCAAATGTGAATTCTGCTCAAAAACCTTCCGCCAAGGTTATCAACTGGGCAACCACATGCATTCGGCACACTTCCACAACTCCGACAGTATTCGAAATGGCGACTACCAATGCTCGCAATGCAGTCGAGAATTCACCAACGCTATGGATCTCATTCAACACAAGAAATCCCATGACAACGGCGAGCGAAAGTTCCTTTGCCCGCACTGCGGTGCTGGTTTTAAAAAGGAGAATCACCTCAATCTCCACGTCGATGCGGTGCACCTGAAAAAGAAACCCTACAATTGTATCTACTGCAATAAATCATTTGCACAAATGTCCAATTTAAATGAGCATTTGAAGATTCACAAAGGTTCCAAGCAACATAAATGCAGTATCTGTGATAGGTCATTCACACTGAGGAAGACTTTACTAATGCATCAGGCTATACACACCGGCGAGAAACGTTTCAAGTGCACTTTCTGTGATGAGTCGTTTGTGTATAGACAGACGCTTGGAGCTCATATAATGAACCATTTCCGTGATGAAAACGAAGAGGAGGTTACGATAAACGAAGAAGTTCTTAGTGACACAGATTTCCTAGGCTACGACGACGACTTGGATATCGAAGATGAGTTCGAACTCCTTGACACATACAAACTACTAATGGACGATAGTTTAACCTAA
- Protein Sequence
- MSINICLEEISFLEKTCRACSRYDPNDSMTFHPIFNDGSSDTTTDQASVVVAGVFEEFLIWNLEIKQNDGLPQQMCNDCLERFVQVKLFREEVLDSQRLLTSYISGREDGSAMITIETLPMSADGGDRIGYISPSKLIEYVGSEEENCEESSTMAKSSNEIDYFEENESDFLFNHPNQIETSDLRDFKADNPEPSSCSKTFEEQSVDDEIKTVEPESETAGSGSGGVKCEICLKIFRTEHHLLRHKRLFHSRTDLTCPICGRKFEKITQRNFDYHLRSHHEKKYKCAYCEKSFQQKIHMINHERTHTKEKPFACKVCGKKFRQQCSLQEHLMTHKDSHPFKCDICGKGFTHRSGLRMHLRLHSGVKRYQCEFCGEGFNQKAHLDLHVMNHTGEKPFKCEFCSKTFRQGYQLGNHMHSAHFHNSDSIRNGDYQCSQCSREFTNAMDLIQHKKSHDNGERKFLCPHCGAGFKKENHLNLHVDAVHLKKKPYNCIYCNKSFAQMSNLNEHLKIHKGSKQHKCSICDRSFTLRKTLLMHQAIHTGEKRFKCTFCDESFVYRQTLGAHIMNHFRDENEEEVTINEEVLSDTDFLGYDDDLDIEDEFELLDTYKLLMDDSLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00671087;
- 90% Identity
- -
- 80% Identity
- -