Spip007386.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- Zbtb41
- Assembly
- GCA_905187475.1
- Location
- LR994573.1:57661578-57663614[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.087 9.1 7.1 0.2 1 23 140 165 140 165 0.93 2 13 1.7e-05 0.0018 18.8 1.2 1 23 171 193 171 193 0.97 3 13 2.8 3e+02 2.3 0.1 2 10 199 207 198 211 0.86 4 13 0.039 4.1 8.2 1.0 2 16 228 241 228 243 0.76 5 13 6.9e-05 0.0073 16.8 5.5 1 23 257 279 257 279 0.98 6 13 1e-05 0.0011 19.4 0.6 1 23 285 307 285 307 0.97 7 13 2.2e-06 0.00023 21.6 2.7 2 23 313 334 312 334 0.97 8 13 0.00019 0.02 15.5 2.1 1 23 346 369 346 369 0.96 9 13 5.8e-06 0.00061 20.2 0.6 1 23 394 416 394 416 0.98 10 13 2.5e-07 2.7e-05 24.5 2.3 1 23 422 445 422 445 0.96 11 13 8.6e-05 0.0091 16.5 0.3 1 23 451 474 451 474 0.96 12 13 1.4e-06 0.00015 22.1 0.2 1 23 480 502 480 502 0.98 13 13 3.6e-06 0.00038 20.9 0.3 1 23 508 530 508 530 0.98
Sequence Information
- Coding Sequence
- ATGATCCAGGAGGAATTCGACGTATGGGATCTAAATATTTGTCATGACGACGGATTACCTCAAAAAATATGTCTTACATGCTTCGATAGCTTCTGCCAAATTCACAATTTCCGGATGATTTGCCAAGAAGCTCAAATGAATTTCGGAGAGCTATGCACTGGGCTTGACATCATAATCAAGCTTGACTCGAATTTCGATGACGTTGACTTTCCGGAAGATTATGATGGTGAGCAAATGATTACTGTCCACGAACACTATCGGTTCCCTGGTGGTCAGCGATCGAAGATTCCAGACGTACTGGTGGAGGAAGAAATATTATGCTCGAATGAGGTAAGCTTTAAGGAAGAGGTGGGCGGAGACGGGAACTCTCAGGACGTGTTTCGAGATGAGACTGTGCACCTTCCTGAAATCAAGGAATATCAGTGCGAGTATTGCATGGACTTAACTAGCTTTGATGACGCAGATCTGCTCAACGAACACTATAACATCTTTCACGCCTCAGACACACCTTACGCGTGCCCTAAATGCGATAAGTCGTTCGATAAAAAGAGCAAGCGAAATAGTCACGCAAGAATTCACTTCCCAATTGTTCTTGTTTGCGAAACTTGCGGCAAGAAAGTACGGGGTGGCGAGCAAATGATGGCTCAGCACAACGAGTTGCATCACATCTTGAAAGATCGAGAGTGCACGACCTGTGGAAAGAAGTTCCGTAATACCACGTTGAAGAGATTCAACTACCACCTGAGCTGGCATGATGCGTCCAAATTACACAAATGCAAGTATTGCGAGAAGAAATTCATTCAGACAACGCATTTGGCGGCGCACGAGAAAACGCACACCGGAGAATGTCCTTTCATCTGCAGCGAATGTGGAATTGGATTTAAAAACTCCGATTTGTTACACAATCACGCGAAAATGCACGGCCTGAGAGATCTAAGATGTACAGAGTGTCCCAAAAAATTCTTCCACAGCAACGCCCTAAGGGCTCACATGAAAACCCACAATCCCAACCACAGGGAGAAGGCAGTCCCCCTCTTTGAATGTGAACTCTGTGGCAGACCTTTCCGTTACAGCATAAATTTGAGCCTTCACAAACACAAAAGACACGGTGAGCCGGCCACACCAGGAGTTGTTGAAATTCTTAAAACACGCGAGATGCAAAGGCCGTTCCTAAGACCATACAAATGTAGCAAGTGCCCAGAATCGTTTCCACTGCAAAAGCAGCTGGTAAAGCACATACAAAACCATGATGAAAAAAGGCCTTACACTTGCGATCGCTGTGGCAAATCCTTTAAGAGAGAGTCACATTTAAAACTGCACATCGACTCGTTGCATTTAAATAAAAAACCCTACAAGTGCACGATGTGTAGTTTTGCGTTTTTCCAACCGATTAACTTAAGGGAACACATTGCTGTCAAGCACGAAGATAAGAGAAATTTTAAGTGCAATATTTGCGGAAAGGCATTCGGTATCGCTAGGACGCTTAGAACTCACATGCGTGCTCATGAAGAGAAGCCCCAGTTCACCTGTCCCATATGTGCAAAAAAGTTCAGACAATTGGGTGTTCTTAAATGGCACATGAATTCCCATCCGAACGAGGGCGGAGTCGGTAAATTAGAGAACGAGGCTAACTTCGCCGCTGAAGCAGAGGACGAGAACGACTTCGATGCTGACGGAGATAACGAGGCTGAAATCGCTGCAGATATAATTATCGATGAGCGATATGAAGTCTAG
- Protein Sequence
- MIQEEFDVWDLNICHDDGLPQKICLTCFDSFCQIHNFRMICQEAQMNFGELCTGLDIIIKLDSNFDDVDFPEDYDGEQMITVHEHYRFPGGQRSKIPDVLVEEEILCSNEVSFKEEVGGDGNSQDVFRDETVHLPEIKEYQCEYCMDLTSFDDADLLNEHYNIFHASDTPYACPKCDKSFDKKSKRNSHARIHFPIVLVCETCGKKVRGGEQMMAQHNELHHILKDRECTTCGKKFRNTTLKRFNYHLSWHDASKLHKCKYCEKKFIQTTHLAAHEKTHTGECPFICSECGIGFKNSDLLHNHAKMHGLRDLRCTECPKKFFHSNALRAHMKTHNPNHREKAVPLFECELCGRPFRYSINLSLHKHKRHGEPATPGVVEILKTREMQRPFLRPYKCSKCPESFPLQKQLVKHIQNHDEKRPYTCDRCGKSFKRESHLKLHIDSLHLNKKPYKCTMCSFAFFQPINLREHIAVKHEDKRNFKCNICGKAFGIARTLRTHMRAHEEKPQFTCPICAKKFRQLGVLKWHMNSHPNEGGVGKLENEANFAAEAEDENDFDADGDNEAEIAADIIIDERYEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -