Basic Information

Insect: Syritta pipiens
Gene Symbol: -
Assembly: GCA_905187475.1
Location: LR994572.1:72294508-72300384[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.0033 0.35 11.5 0.8 1 23 254 277 254 277 0.94

2 24 0.35 37 5.2 0.9 1 21 314 334 314 335 0.92

3 24 0.00063 0.067 13.8 0.4 2 23 346 367 345 367 0.97

4 24 0.025 2.6 8.8 0.5 1 23 374 396 374 396 0.94

5 24 0.024 2.6 8.8 0.2 1 23 504 527 504 527 0.96

6 24 0.012 1.2 9.8 1.2 1 21 536 556 536 557 0.95

7 24 0.21 23 5.9 1.4 1 19 565 583 565 586 0.92

8 24 0.005 0.53 11.0 2.6 2 23 596 617 595 617 0.97

9 24 3.5e-07 3.7e-05 24.1 0.8 1 23 624 646 624 646 0.98

10 24 3.1 3.3e+02 2.2 0.4 2 23 677 698 676 698 0.90

11 24 0.0004 0.042 14.4 5.0 1 23 781 804 781 804 0.97

12 24 0.041 4.3 8.1 3.0 1 23 841 864 841 864 0.95

13 24 6.6e-06 0.0007 20.0 1.0 1 23 903 925 903 925 0.98

14 24 0.0002 0.021 15.4 1.4 2 23 949 971 949 971 0.97

15 24 0.036 3.8 8.3 1.8 1 23 1013 1036 1013 1036 0.95

16 24 0.28 30 5.5 0.5 1 22 1043 1064 1043 1064 0.96

17 24 0.039 4.1 8.2 1.7 1 23 1073 1096 1073 1096 0.92

18 24 0.0018 0.19 12.4 2.0 1 19 1102 1120 1102 1121 0.97

19 24 2.2e-05 0.0023 18.4 0.7 1 23 1132 1154 1132 1154 0.97

20 24 1.1e-05 0.0011 19.4 0.3 2 23 1173 1194 1172 1194 0.95

21 24 0.00035 0.037 14.6 4.3 1 23 1200 1222 1200 1222 0.99

22 24 1e-07 1.1e-05 25.8 3.3 1 23 1228 1250 1228 1250 0.98

23 24 4.1e-07 4.3e-05 23.9 2.4 1 23 1256 1278 1256 1278 0.99

24 24 0.00031 0.032 14.8 0.2 1 23 1284 1308 1284 1308 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.0033	0.35	11.5	0.8	1	23	254	277	254	277	0.94
2	24	0.35	37	5.2	0.9	1	21	314	334	314	335	0.92
3	24	0.00063	0.067	13.8	0.4	2	23	346	367	345	367	0.97
4	24	0.025	2.6	8.8	0.5	1	23	374	396	374	396	0.94
5	24	0.024	2.6	8.8	0.2	1	23	504	527	504	527	0.96
6	24	0.012	1.2	9.8	1.2	1	21	536	556	536	557	0.95
7	24	0.21	23	5.9	1.4	1	19	565	583	565	586	0.92
8	24	0.005	0.53	11.0	2.6	2	23	596	617	595	617	0.97
9	24	3.5e-07	3.7e-05	24.1	0.8	1	23	624	646	624	646	0.98
10	24	3.1	3.3e+02	2.2	0.4	2	23	677	698	676	698	0.90
11	24	0.0004	0.042	14.4	5.0	1	23	781	804	781	804	0.97
12	24	0.041	4.3	8.1	3.0	1	23	841	864	841	864	0.95
13	24	6.6e-06	0.0007	20.0	1.0	1	23	903	925	903	925	0.98
14	24	0.0002	0.021	15.4	1.4	2	23	949	971	949	971	0.97
15	24	0.036	3.8	8.3	1.8	1	23	1013	1036	1013	1036	0.95
16	24	0.28	30	5.5	0.5	1	22	1043	1064	1043	1064	0.96
17	24	0.039	4.1	8.2	1.7	1	23	1073	1096	1073	1096	0.92
18	24	0.0018	0.19	12.4	2.0	1	19	1102	1120	1102	1121	0.97
19	24	2.2e-05	0.0023	18.4	0.7	1	23	1132	1154	1132	1154	0.97
20	24	1.1e-05	0.0011	19.4	0.3	2	23	1173	1194	1172	1194	0.95
21	24	0.00035	0.037	14.6	4.3	1	23	1200	1222	1200	1222	0.99
22	24	1e-07	1.1e-05	25.8	3.3	1	23	1228	1250	1228	1250	0.98
23	24	4.1e-07	4.3e-05	23.9	2.4	1	23	1256	1278	1256	1278	0.99
24	24	0.00031	0.032	14.8	0.2	1	23	1284	1308	1284	1308	0.93

Sequence Information

Coding Sequence: ATGTTAAAACTGGAAATAACAAGTTTAAAAGAAACGTGTATGAAAGAGTTTAGTGAAATTAAAGCTCTTTTGATGAAGCAGTACAAACCAGAACCAGTCAAAGAAGGGAACTATCCAAAGCGTGATGTCGAAGAAGTTGAACCACCAGACACTCAAGGGGTACTTAAGTTCACCAAACTATTTCCAATCAACACGGAAGAGCAACTTAAAGCATTAGATGGCATCGATGAGGATCAGAAATTGGTTGCTATAGCCACAGCAAAACAACTTATCCATCATGGTGGCCTTTGCTCCAATATGAATCGAATCTTTGGCAACAGAATCATTGTGAATTATAACTACGAAGGAAAACGCGGAAAGAAATCATTAAAAGAACTTAACACTGTTAACGAAATACTCTTTAGAATTACAACGGCGCCATTTTTGAGAAGTGTGCAATACTTTGCTCATCGTCTGTTCTCGGATAAAAAATTCCAACAACTCAAATGTATGATCTGCAACTTTTCCAAAGCCTCTAACGTTCAAAGGCTTCGTGAACACATCACTGCCCACAATAAGTCGGATTTGGCTGAATATCTAAAGACCAGTGAGATTGTGAAAAGGTTTTACCCAGGCATGGAGGTGAAGGATGTCGTTCCACTGATAGTCAGTCAGATCAAGGAGTACAAATTGGGAAAACTCCACTCAATAATTAATGCGCACCGCATTGAGATGGGTATCAGTGATTCGGATGAGAGCGATTTGGAATCAAACACCGACTACATTTGTGAGCTATGTGACGAGGCGTTTAACCGGAAGCACAAAGCTATGACGCATCAAGCCTACGAACATACTTTGGATGAATGTCCATACACCTGCGAGAATTGTAACTTGAAGTTCACTTGCAAACAAGTGTATGACAGTCATCTGAAGCATCACTGTGAGAATTCCGATAAGAGATTCGCGTGCCAGCAGTGTCCAGCACGGTTCACTTGGGAGAAGAATCTTGAAAATCACAAATGCAGCAAGAGGGCTGTTGCAAATCACTCGAACACAACCTGTGATGTATGCGATCGCGTGTTTGTCTGGCCGAGAGACTTAAAGAATCACAAAAAAACACACCTGCCCACCGATAAAACTCATAACTGCCCCGAATGCGACGAGAAGTTTCTTGAAGCCGAAGAGCTACGAAATCACTCAAAGCTGCATAAGAAGAAAAAGTTCCAGTTCTTAGACAAGAAGTTGATTTGTATGTTGTGCCAGGTAGAGTTCTTAAGTATCCGGAAGCTAAAACATCACCTCTTCACACATTCAGATGGTCAAACTGATGTGAACTTTAAAAGCTGTGGGTTCGTGAAGAGCTTCTTTCCGAATGCATCTGAATCATCTGTTTCGGAATACGTTCGAAATTGTTTCAATGAGCAGAAGCTCTGGCAGTTGTACATCGCTGTGAATAAGCAAGGCCTCGAGATGGTCCTAAGCGATTCAGACAGTGAAGACGAGCAATCACCAGATGCACCTGTGCAAGCGTACGTCTGTGAGTTGTGCGATTTGAAGTTTCCTCGGATGCAGTCAATTCTTCTTCATCAGTACACGGAGCATGAAGCTGAGAAATGTAGCTTGCCATACAAGTGTGATAAATGTGACGAACAGTTCGTATGCAAAGCACTTCTCATGCGCCACGTTAAAAGTGACTGCTCCAGCATAACAAAGCATCCATGCACGAAATGCGGCCTTAAATTTATTTGGAAACAAAACTTGGCCAACCACAACTGCCTGCGAACGGAAGATCGTCACGATGATAAAAAGTGTGAAGTTTGTGGGAAAAGATTTGTTTGGGTGAAGGACTTGCATCGCCACAAACGCAGCCATATCCCAGATGAAAAGAAATTCGAGTGTCTGGTGTGTGGCCGGAAGTTCAACCGAAAGGACAACATGAGGGCGCATATGAAGGTCCACTCGGACGATTACAAGGCGCGGGAGAAGGAGCTAGTTAAGTGGGATCAACAGGACGTGAACATGTGCAAGCCACATGGCAAGAAGATTATACAATGCAAGATCTGCTCATCAAAGCAGGACTCAATCAAGAACTTAACTGATCACCTCATCTCACATAAGAACCCGGCAACTCTCGTACGGACCGAATCGGAAGTGATGGAAATCTCGACGCTGCTGTACAACAAACCAATGGATCAGCAAACCCTGGAGAAGGCAATTTTCGCGGATCTCACAGACGGAAAGTACTCGCGGTTCTATTCCATCACAAACGAAATGGGATATGAGCTTAGTTTAGTAGACTCGGAAACGTGCACTGATCTCGATCCAGACACTGATGACGATGAAGACATAAAGTGCAAGGGGTATCGATGTAAAATGTGCAATAAAACTTTCAACAGAAAGTTTAAAATCTTCGATCACCAAAGACAGAGTCACGCGTGGGACGACCTACCCTTGGAATGCATCCACTGCTCCTCGAAGTTTGTCTGCGACAAGGTCTATAAATTGCACTTACAAAACGAGTGTGAGAACAGTGAAAAACAATTCAAGTGCAAGCAATGTCCATTGCAGTTTGTTTGGAAAGAGAACCTGAAAAGTCATGAGAAGCATCGGCATGAGAAGAACCCAGTGATGCCGAAGAATCACCATTGCACCGAGTGTGACAGGAGCTTTCTGTGGCTCAAGGACCTGCAGAAGCACAAAAAGTGCCATCAGCAGGAGGACGAGAAATTCGAATGCACGTGGTGTTTTCGAATTTTTATGCGACGGGATAATCTTAAGGTTCATATGAAGGTTCACCAGAATGCCACTCATCTCTTGCTGCCTGATATCTACTACCTGGCACGGCCGAACGGGACGAAAAAAGCTGAGTGTAAACATTGCGAGCAGAAGTATTCCACTGCTTATCAGCTGTTGGACCACCTTCAGACTGAGCATTTCAAGTGCCCAGCGCATCTGTTGCCTTTGCCCGATCCCACCAGTTACTCGATTACAAATGCTCTGGGCTACGAAATGGACATTGATGACTCGGAGACAGAAAAGGAAGAACCGACGGAGAAGTACTTTTGTAGTCTGTGTGATGCGCGATTCAATCGACGCTTCAAGATCCTGCAACATCAGCAACAGCTTCACTACTCGGATAACATTCCTCATAAATGCACCGAATGCAGTTTTAAGAGCGTCTCCGAGGCTGTGCTTCTTTATCACATGCGAACACAGTGCATGAATCAATTGAAGCAATACCGGTGCCACAAATGCACGATGCGATTCATGTGGAAGGAGAATCTCGAAAATCACGAAAGTCTAATCCACGACAGTCCACGAATGCATACGTGCGAAGTATGCAAGAGAGACTTTGCCACCCAACACGATCTTAAGAATCACAGCGACTGCAAGCCAGCTGCAGAGGTTAAGATTTTCGAATGCGCCATATGTGGACGGAAGTATAGCCGGAAAGATCGATTGATGCGGCATGCAAAGCTGCATGTCGCTGAAAAGAAAGAACCCCAAGTCAAACCGACCCCGACAGATAAAAAGTTCTTGTGCGCCTTCTGTGGCAAAGAAGTGTCGAGCTCCTCCAACCTGGTGATTCATATGCGACGCCATACCGGTGAGAAGCCATTCAAATGTGAGTTCTGCAATAAAGGTTTTCCAAGATCTTCTGACTTGAGTTGTCACAGGAGAACGCACACTGGAGAGCGACCGCATAAGTGCAACGTATGTGATAAAGCATTTTCACGTTCGTATAAGCTTCAGACTCACATGAGAATCCACTCTGGCGAACGGCCGTACAAGTGTACGTACTGTGAGAAAAGTTTCACGCAATCAAATGATTTAACGCTTCATGTGCGGCGACACACGGGTGAAAGACCGTACATTTGTGAGACATGTGGAGAGCGTTTCATCCAAGGCACGGCGTTGAAGAATCACCGAAGAATGCGGGGGCACTATGTGGTTTAA
Protein Sequence: MLKLEITSLKETCMKEFSEIKALLMKQYKPEPVKEGNYPKRDVEEVEPPDTQGVLKFTKLFPINTEEQLKALDGIDEDQKLVAIATAKQLIHHGGLCSNMNRIFGNRIIVNYNYEGKRGKKSLKELNTVNEILFRITTAPFLRSVQYFAHRLFSDKKFQQLKCMICNFSKASNVQRLREHITAHNKSDLAEYLKTSEIVKRFYPGMEVKDVVPLIVSQIKEYKLGKLHSIINAHRIEMGISDSDESDLESNTDYICELCDEAFNRKHKAMTHQAYEHTLDECPYTCENCNLKFTCKQVYDSHLKHHCENSDKRFACQQCPARFTWEKNLENHKCSKRAVANHSNTTCDVCDRVFVWPRDLKNHKKTHLPTDKTHNCPECDEKFLEAEELRNHSKLHKKKKFQFLDKKLICMLCQVEFLSIRKLKHHLFTHSDGQTDVNFKSCGFVKSFFPNASESSVSEYVRNCFNEQKLWQLYIAVNKQGLEMVLSDSDSEDEQSPDAPVQAYVCELCDLKFPRMQSILLHQYTEHEAEKCSLPYKCDKCDEQFVCKALLMRHVKSDCSSITKHPCTKCGLKFIWKQNLANHNCLRTEDRHDDKKCEVCGKRFVWVKDLHRHKRSHIPDEKKFECLVCGRKFNRKDNMRAHMKVHSDDYKAREKELVKWDQQDVNMCKPHGKKIIQCKICSSKQDSIKNLTDHLISHKNPATLVRTESEVMEISTLLYNKPMDQQTLEKAIFADLTDGKYSRFYSITNEMGYELSLVDSETCTDLDPDTDDDEDIKCKGYRCKMCNKTFNRKFKIFDHQRQSHAWDDLPLECIHCSSKFVCDKVYKLHLQNECENSEKQFKCKQCPLQFVWKENLKSHEKHRHEKNPVMPKNHHCTECDRSFLWLKDLQKHKKCHQQEDEKFECTWCFRIFMRRDNLKVHMKVHQNATHLLLPDIYYLARPNGTKKAECKHCEQKYSTAYQLLDHLQTEHFKCPAHLLPLPDPTSYSITNALGYEMDIDDSETEKEEPTEKYFCSLCDARFNRRFKILQHQQQLHYSDNIPHKCTECSFKSVSEAVLLYHMRTQCMNQLKQYRCHKCTMRFMWKENLENHESLIHDSPRMHTCEVCKRDFATQHDLKNHSDCKPAAEVKIFECAICGRKYSRKDRLMRHAKLHVAEKKEPQVKPTPTDKKFLCAFCGKEVSSSSNLVIHMRRHTGEKPFKCEFCNKGFPRSSDLSCHRRTHTGERPHKCNVCDKAFSRSYKLQTHMRIHSGERPYKCTYCEKSFTQSNDLTLHVRRHTGERPYICETCGERFIQGTALKNHRRMRGHYVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -