Spip010876.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- -
- Assembly
- GCA_905187475.1
- Location
- LR994571.1:47313161-47315280[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.3e-05 0.0087 16.6 0.4 1 23 114 137 114 137 0.97 2 13 7.8e-05 0.0082 16.7 1.2 3 23 144 165 143 165 0.96 3 13 3e-06 0.00032 21.1 2.8 2 23 175 197 175 197 0.96 4 13 3.1e-07 3.3e-05 24.2 4.2 1 23 320 342 320 342 0.98 5 13 3.5e-06 0.00037 20.9 2.9 3 23 350 370 348 370 0.97 6 13 2.3e-05 0.0024 18.3 1.2 1 23 376 399 376 399 0.93 7 13 8e-07 8.4e-05 22.9 5.8 2 23 409 430 409 430 0.97 8 13 0.00046 0.048 14.3 0.6 2 23 436 457 435 457 0.97 9 13 1.3e-06 0.00013 22.3 0.4 1 23 463 485 463 485 0.96 10 13 4.7e-07 5e-05 23.7 0.7 1 23 491 513 491 513 0.98 11 13 1.3e-06 0.00014 22.3 0.9 3 23 521 541 519 541 0.96 12 13 2.7e-07 2.9e-05 24.4 1.9 1 23 547 569 547 569 0.99 13 13 4.6e-05 0.0048 17.4 0.1 1 23 574 597 574 597 0.93
Sequence Information
- Coding Sequence
- ATGGTAGATTTCGATATAGACAAAATATGTAGAGTATGCCTGAGGGGAGACGTAGAGCTATCTCTCCTCTTCGACGATCAGAACGCCATCGATGGGATTTGTCTCTCGGAAATGATCTCCGAGTGCACAATGTACACGGTTCTCCGACACGATGAATTTCCTCATTTTATATGCTGTGAATGCATAAGTCGAGTGCGGAATGCGTATGTTTTCAAGAAGCAATTTGAGGCGTCTCATCGGACACTGTTGGGCTTGCTGGGGTCAGATCACATAATCCATGGTGATAGAAAACCGAACATGGCCAATGACAAGTGCATTCAAACAGAAGACTCCACTCTGTATCCGTGTGAAAAGTGCGACGAAAAGTTTGTCACCTACGAGCGGTTGAGGGAACACAGACTGACTATACACAAGGGCACAGCGAATCTCTGTCGGATTTGCAAGAAATCTTTCATCCGTGTTGCAGATCTTAGGAATCACATGGCAGTTTGCCATCCAGAGTTTGGTCACATAACACCGAATGAGTGTCAGATTTGCCAGAAGAAGTTCACGCGAAAGGATCACGTCGCTCGGCACATGAAATCCGTACACGCTCTCGAGGAGGAGGACACGGATAGGAAAGTGAATGATATGAAGAACGAGACTTTGGAGGAAACTGAAGTTGATATCCAGAATCTAGAGACTGATGTTGACCTGTTTTCCAATTGCGATGGTGGAGAGTGTGACGACAATGCCAGCAACAGTGGGAGGTTTGACGCCACAAATCCCTTCAGCAGTGACGAGGATGAGAAGCCTCTGGCGCACATTCAAAGGGAACAGAGCAATGCAGTCGAGAGAGACATTCAAGTGAAGCTGGAGCCAATTGAACACGTGTCTGCGATTCTCTCACCCGTCCAGAGTCCAGTGAAAGATGAGCCGGAGACCACAGATCCTCCCTCAAAATCCCCCAGTCGTCGATACAAGTGCACAGAATGTGAAAAGTCCTTCACTCGCAGCAGTCACGTGAAGCGGCACCTACTTTCGCATAAACAGGAGAAGCCCTTTGGCTGCACCGTGTGCGACAAACGCTTCAGCAGAGCGGATCACCTCAAGACACATCTGACCAAGCACAACGAAGACAAACCATTCAAATGTGATACTTGCGACCGGTCCTACGGTCGTCCGGACCTCCTGAAGCGTCACAAGGAGCAGAAGCACAGCGGGGAGAAGCTAGGCAAGACCGAGGTCTGTGATCATTGCCACAAAGCATTCAGCAGTAAAAACTACCTGCGGAAACACATGCGTATGCACTCGGAGAAGAGCTGGAAGTGTAAGTGGTGTTTCCTTGAATTCGAGTCAAAAGAGTCGTTGAGGGAGCACGTCAAGTCGCACAACACTGAGAAGCCGTACCTCTGCTCGGAGTGTGGTCTGCGATTCATCCGAAATGACTATCTACTCATCCACATGAGGCGGCACAATGGTGAGAAACCGTACAAATGTAAATACTGTGATAAGGGATTCCCGCGTGCGACGGATTTAAACGTCCACGAGAGGTACCACACGGGAGAGAAGACACATCTGTGCACCACGTGTGGTAAGGGCTTTCAGCGGGCCTACAATTTGGTGGTCCACATGCGGGTGCACACCGGGGAGAGGCCGTACAAGTGTCCGTACTGTCCGAAGAACTTTGCCCAGTGCAACGACTTGAAGGCGCACGTTCGAAGGCACACTGGGGAGCGGTTCAAGTGCGAGATTTGTGGGACGGGCTTTATACAGGGATATAATCTGACGCAACATAAGCTGGCTGTGCATGGAATTGAGGTCGAGTCACGGATAAAGCGTGTTGCTAAAGTTGTGACTAGTAACGAGCCCACGTAG
- Protein Sequence
- MVDFDIDKICRVCLRGDVELSLLFDDQNAIDGICLSEMISECTMYTVLRHDEFPHFICCECISRVRNAYVFKKQFEASHRTLLGLLGSDHIIHGDRKPNMANDKCIQTEDSTLYPCEKCDEKFVTYERLREHRLTIHKGTANLCRICKKSFIRVADLRNHMAVCHPEFGHITPNECQICQKKFTRKDHVARHMKSVHALEEEDTDRKVNDMKNETLEETEVDIQNLETDVDLFSNCDGGECDDNASNSGRFDATNPFSSDEDEKPLAHIQREQSNAVERDIQVKLEPIEHVSAILSPVQSPVKDEPETTDPPSKSPSRRYKCTECEKSFTRSSHVKRHLLSHKQEKPFGCTVCDKRFSRADHLKTHLTKHNEDKPFKCDTCDRSYGRPDLLKRHKEQKHSGEKLGKTEVCDHCHKAFSSKNYLRKHMRMHSEKSWKCKWCFLEFESKESLREHVKSHNTEKPYLCSECGLRFIRNDYLLIHMRRHNGEKPYKCKYCDKGFPRATDLNVHERYHTGEKTHLCTTCGKGFQRAYNLVVHMRVHTGERPYKCPYCPKNFAQCNDLKAHVRRHTGERFKCEICGTGFIQGYNLTQHKLAVHGIEVESRIKRVAKVVTSNEPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -