Spip004555.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- ZFX
- Assembly
- GCA_905187475.1
- Location
- LR994573.1:11815355-11820081[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.059 6.2 7.6 0.5 5 23 33 52 18 52 0.91 2 20 0.00022 0.023 15.2 1.0 1 23 194 216 194 216 0.98 3 20 2.5e-05 0.0026 18.3 0.3 2 23 226 247 225 247 0.97 4 20 0.00011 0.012 16.2 0.6 1 23 253 276 253 276 0.97 5 20 0.0041 0.43 11.3 3.0 1 19 309 327 309 329 0.97 6 20 1.9e-05 0.002 18.6 3.4 1 23 337 359 337 359 0.98 7 20 2.2e-06 0.00023 21.6 2.7 1 23 365 388 365 388 0.98 8 20 0.0034 0.36 11.5 1.4 1 23 398 421 398 421 0.94 9 20 4.2e-06 0.00045 20.7 2.7 3 23 513 533 511 533 0.97 10 20 5.1e-07 5.3e-05 23.6 0.1 1 23 539 561 539 561 0.98 11 20 0.00065 0.068 13.8 0.5 1 23 572 596 572 596 0.98 12 20 0.00052 0.055 14.1 0.8 1 20 602 621 602 623 0.94 13 20 0.085 8.9 7.1 5.1 1 23 661 683 661 683 0.97 14 20 9.4e-06 0.001 19.6 2.1 1 23 689 711 689 711 0.98 15 20 1.9e-05 0.002 18.6 0.6 1 23 717 739 717 739 0.95 16 20 0.0018 0.19 12.4 5.3 3 23 747 767 745 767 0.98 17 20 1.8e-06 0.00018 21.9 2.1 1 23 859 881 859 881 0.98 18 20 0.045 4.7 8.0 0.9 1 23 887 909 887 909 0.96 19 20 4.8e-06 0.00051 20.5 0.6 1 23 916 938 916 938 0.98 20 20 0.00083 0.088 13.4 4.5 1 23 944 966 944 967 0.96
Sequence Information
- Coding Sequence
- ATGTCTAAAGTTCAGGTCTTCTTTGTGTCAGTTTCGAAGTTAGTCTATTCATATCGATGTCACCAAGAACTTGAACAGATCACCGAAAGGAAGAACCGATGCGACAAGGAGTACGACATGAAGGCGCTCTTTGAGAGGCACATGGCCAGAGCACACAAGCCCGGTACCGATGGGACGGTCGAGGAGATCCTTGCGAAAGTCACCAACAGCGACTTGTTCACACCGATTTCGGTGGACATGACCACCCCAACTGGATTAATCTACACCCTCAACGATCCCGATGATAAGTTCCTCAAGACAAATGATTTCTACACATTTGGAATGGACAGTTTCACTGTTCCAGAGATTGATTATCCCGCGATCCCGCCAGTGATCACAAGTCTCAGTCCTATTCGGGAAGAGGTGTTGCTGTTTTCGCATGTAGAACCAGGAACGTCCGGGCAAAAGTACATGCTTCCAGAGATTATCGAGAAGCCGTCGCCGGTGAAGCAACTTCAAAGGGACCTGGACGCCGAGGTGTACTACCCGCCGGAAATTGTGCCACAGCCAAAAAGAGTCAAACCCAATTTGACCAAAGAGTTTCGTTGTCGAAAGTGCCCGATGTCGTATAATTTTGAGTCGAACCTGAGGCTGCACCTGGCATCGCATGTGTCCAGTTGTAGCACGAGTATGCAGAAGTGTCCCGAGTGCGGAATGGTCTTCAAGCGAGTGTCCAGCTTTAAGGGGCACCTTAAGGCACATCAGACGAACGATCACTTCAAGTGCAACCGATGTGACAAGGAGTACGACATGAAGGCGCTCTTTGAGAGGCATATGGCCAGAGCACACAAGCCCGGTACCGATGGAACGGTCGAGGAGATCCTTGCGAAAGTCGCGAGTAACGCGAGAGGTCGGTCGAGATCCGTGAAGAAGACCCAGGGCAAGTATCAGTGCCACGCGTGCGAGAAGACCTTCTACAAGCCCTGCCTGCTGAAGCGCCATGAGGTTTGCCACACAGGCGCCAAGCCGTACAAATGCACAAAATGCGAGCAGAGTTTCACACAGAAGACCTCGCTTGACCGACACACGCTGCGTCATATGGGGGTCAAGGATTTCAAGTGTCCCAAATGCGATTGCAGCTTCGCGCAGAAGAATAACCTCATCCTGCACATCAAACGAACCCATCCAATGGACACGAACACGGACAACATGTTTGCCTGCGACTATTGCCCGTGCGTGTTCACGAAGTTGAACAGCGTCAACCGTCACAAGGCGATGATGCACCCGGAGAAGGAAAGCCGAGAGTACAACGACGGATTTAACGACGACGACGATGATAGCGTGAATGTAGCCCGAGTCATGGAGCAGCTGAAGAGCTTGGAGTCCATGAACATTATGGACATGCAGCCACCGGGGCTAGAGCTGTCGCTGATGAAGCCACCGTCACCGGGACCAAGAGTTCGCACCGTGAAGCTGGTGGACACGCTAAATCCGAAGAAGGAGAAGACTTTCAAGGAGGTGAAGGAGATCCTCTATAAGGGACAGAGGACTATGGCCTGCATGTACTGCGACAAGCCCTTCAAGAGGCAGTTCGATTTACTGAGGCACCACCGAACTCACACCAAGGAGAAGCTGTTTCAGTGCAATGTGTGTGAGAAAGCATTTTCCACAAACGCTGCCCTGAAAGTCCACCTTAACATCCACGTCACGTCGCAAGAAAAGCCGGCCAAGGCTTATGAGTGCACCGCCGACGAGTGTGGGAAGAGATTCTCCTCCATCCGCCGGCTGGACCTTCATACCAAAACACACAACGGATCCATATCCTACATCTGTCCTCTGTGCTCGAAGACGTTCACCTCGAAGGCCGGGTTCTCAGCGCACAAGCATCAGCAGGACGATAAAGAATTCGACATGCTTCGGTCGATGCTGATGCCGCCAGTCAAAATGCAGTCAAACCCAACGGAGGAGCTTCAAAAGGCTCAGAAGTACGTGAATAGAAGCCATCAGTGCTGTGTTTGTGGGTTGAAAGTGCAGAAGTTGTCGCACCTGAAGCAGCACGAAGCCACGCACACGGGAGCAAAGCTTTTCAAGTGTGGAATCTGTTTTAGGTCATACACAACAAAAAGTTCTCTGAACCTCCACACCAAGATCCACGCCGCTGAGAAGACCCACGTCTGTGAAGTGTGCAACGCGAAATTTATCACCCGGTCGCTGTTGAAACGTCACATGGTCGCGCACAGTGACGAACGAAAATTCGGCTGTCCCTACTGCAACCATCGGTTTAAAACCAGCGACAACTGCAAGAATCACATCCTCACGCATGCGAGGACTCTGCTTGCAACTCCTGCGGAGTCCGAACCTCCTCCCAATTTTTATGAGGAAGAAGAACCTCCCGAGACCAACTCCCAGCCACTGATTGCCGTCGTGCAGAGTCCGCAGAAACACCTCTCGCCGAAGTTCATCCAACTGGAGATGGTTAAGAACTGCAAGAAGCACAGCCACAAGAATCTGACCATCGAAACGATGGCAAACACGCCGAAGAAGTCGTCAAAGAAGTCGCTGGCGCGATCGTTGAAAACGATCAGTCGAACGGAGCACCGTTGTGGCGAGTGCGGAAAGATTTTCTACAAAGGCAGTGATTTGAAGCGTCACCTTCGCACGCATACGAAAGAGAAGCCGTTCGCTTGCAGTTTTTGTCCGAAAAAGTTCGCTTTGATGTCGACGAGAGTGCAGCACGAGAAGACGCATGATAAGCTGCGGGAGACTTTTACATGTAACGTCTGTGGGAAGAAGTATACGTCGAAGAAGGTGCTTGTCGTGCATTTGAGGATCCACACGGGAGAGAGGCCATTTAAGTGTGCTTATTGTGTGAAGACATTCCGTACGTCTGGGCACAAGATTTCGCATATAAAGGCACATCATAAGAAGAGAAAGTGA
- Protein Sequence
- MSKVQVFFVSVSKLVYSYRCHQELEQITERKNRCDKEYDMKALFERHMARAHKPGTDGTVEEILAKVTNSDLFTPISVDMTTPTGLIYTLNDPDDKFLKTNDFYTFGMDSFTVPEIDYPAIPPVITSLSPIREEVLLFSHVEPGTSGQKYMLPEIIEKPSPVKQLQRDLDAEVYYPPEIVPQPKRVKPNLTKEFRCRKCPMSYNFESNLRLHLASHVSSCSTSMQKCPECGMVFKRVSSFKGHLKAHQTNDHFKCNRCDKEYDMKALFERHMARAHKPGTDGTVEEILAKVASNARGRSRSVKKTQGKYQCHACEKTFYKPCLLKRHEVCHTGAKPYKCTKCEQSFTQKTSLDRHTLRHMGVKDFKCPKCDCSFAQKNNLILHIKRTHPMDTNTDNMFACDYCPCVFTKLNSVNRHKAMMHPEKESREYNDGFNDDDDDSVNVARVMEQLKSLESMNIMDMQPPGLELSLMKPPSPGPRVRTVKLVDTLNPKKEKTFKEVKEILYKGQRTMACMYCDKPFKRQFDLLRHHRTHTKEKLFQCNVCEKAFSTNAALKVHLNIHVTSQEKPAKAYECTADECGKRFSSIRRLDLHTKTHNGSISYICPLCSKTFTSKAGFSAHKHQQDDKEFDMLRSMLMPPVKMQSNPTEELQKAQKYVNRSHQCCVCGLKVQKLSHLKQHEATHTGAKLFKCGICFRSYTTKSSLNLHTKIHAAEKTHVCEVCNAKFITRSLLKRHMVAHSDERKFGCPYCNHRFKTSDNCKNHILTHARTLLATPAESEPPPNFYEEEEPPETNSQPLIAVVQSPQKHLSPKFIQLEMVKNCKKHSHKNLTIETMANTPKKSSKKSLARSLKTISRTEHRCGECGKIFYKGSDLKRHLRTHTKEKPFACSFCPKKFALMSTRVQHEKTHDKLRETFTCNVCGKKYTSKKVLVVHLRIHTGERPFKCAYCVKTFRTSGHKISHIKAHHKKRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -