Spip009083.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- Clic
- Assembly
- GCA_905187475.1
- Location
- LR994571.1:18594471-18615598[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.5e-13 1.4e-09 37.6 0.0 4 44 120 161 117 162 0.91 2 3 0.62 1.4e+03 -0.7 0.0 28 37 191 200 190 205 0.85 3 3 2.1e-09 4.7e-06 26.3 0.0 10 39 233 265 230 279 0.88
Sequence Information
- Coding Sequence
- ATGTCCGAAGATAATCAAGAAAATGGAACCGCCAACGGGGATGTCCCAGAGATTGAATTAATTATTAAGGATGAAAATAAAAGTGTTGATGTCGCAACCGAAAAAGATTTCACGAAACAAAGCAACAGTTTGACAAATGATCAGTACATCATATACGAGCTGAAGACTGACACAGAACCAACATTTAACTATGTGATAACTCAGGTGCAGAAACCACCTGGCGAATCACCTTCGAACTCCACTCCAAACGATAATGAAGCGCCTCCCATTGTGATAAGTGTACAGATCCCAGTGGAGAATGATGTCGAAGAGACCAAAGAGAACTCGCCCAAGACTCGGCGCATTTTGAATCGCAAGAAGCTGGCTGACGCACTTGACGCTGTTGTTAGCAATCAAATGAGTATAAGTAAGGCTGCTACTTTTTTCCAAGTCACCAAAAGCACTCTATGGAAAGAAGTGAACAAACACACCAACCACCGGAAAAAGAAAGTCGACGAAGAGTTGAATCGAAAAATTGCGGATCGTATTTGCGCTGGAGAATCTCTATCTGGTATTTCGAGATCATTGAAAGTGGCCAAATCCACTTTACATCAGCACAAGGTCCGCCTAGCACAAAGGGGTCAGCTCCCACCGAACATCACACTCAAACCACCTGTAGATCGGTCGGAACGATCTGCCATAAAGGAGCGCGTCGTACAAGCGTACCGTGGCTGCCGGGTCAATGGGATGTCAATACGATTGGCAGCAAAGTTTTTTTCGATTCCACCAACCACATTGTGGAAGCATATGCGACGTTTCAAAGCTTTACAGGAAAGGAAAAACGGAGGTGTTCAATACTCTGCGGAAAAAAGCAAAAAAGATGACCCAAATGATCCAGATGATCCAGATGAACAATTTGCCAGCGAAGCTGATGACAATGATGGCTTTGATGCCGATGCGGAGGATTCGACAGACGTACCCACGACAAATGATACTGATGGTGATACCTTTAGTGAACAGCAAGAGACTAACAGCGAAGAAGCGGACTTTTTGATCAGTTTCGACTTTGAAACATTTGAAGCTTATGCATCTACTATTGACGGACGACGTAAGGGAGCATGTCTATTTTGCCAGGAATATTTCATGGACTTGTACCTGTTGGCCGAGTTAAAAACAATAAGCTTAAAGGTCACAACAGTTGATATGCAGAAACCACCACCAGATTTCCGCACCAACTTTGAGGCAACACATCCGCCAATTCTAATTGATAACGGCCTTGCAATCCTCGAGAATGACAAAATCGAGAGGCACATCATGAAGAACATCCCGGGTGGATATAATCTTTTTGTGCAGGACAAGGAAGTCGCCACTCTGATTGAGAACCTATATTCGAAACTAAAGTTGATGTTGGTTAAAAAAGATGAAAATAAAAATAATGCTTTGCTCTCACATTTAAAGAAAATCAATGATCATTTAGCATCACGTGGAACACGCTTTCTCACAGGCGATACAATGTGCTGTTTTGATTGTGAGCTAATGCCAAGACTACAACACATTCGAGTGGCTGGAAAGTATTTTGTTGATTTCGAAATACCCACTCATCTGACAGACTTATGGCGTTACATGTATCACATGTATCAATTAGATGCCTTTACGCAGTCCTGCCCAGCCGATCAGGATATTATTAATCATTACAAACTGCAACAGATGCTCAAAATGAAGAAACACGAAGAACTAGAAACACCAACATTCACAACGTCAATTCCGATTGATATCTCGGAGTAA
- Protein Sequence
- MSEDNQENGTANGDVPEIELIIKDENKSVDVATEKDFTKQSNSLTNDQYIIYELKTDTEPTFNYVITQVQKPPGESPSNSTPNDNEAPPIVISVQIPVENDVEETKENSPKTRRILNRKKLADALDAVVSNQMSISKAATFFQVTKSTLWKEVNKHTNHRKKKVDEELNRKIADRICAGESLSGISRSLKVAKSTLHQHKVRLAQRGQLPPNITLKPPVDRSERSAIKERVVQAYRGCRVNGMSIRLAAKFFSIPPTTLWKHMRRFKALQERKNGGVQYSAEKSKKDDPNDPDDPDEQFASEADDNDGFDADAEDSTDVPTTNDTDGDTFSEQQETNSEEADFLISFDFETFEAYASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENDKIERHIMKNIPGGYNLFVQDKEVATLIENLYSKLKLMLVKKDENKNNALLSHLKKINDHLASRGTRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTHLTDLWRYMYHMYQLDAFTQSCPADQDIINHYKLQQMLKMKKHEELETPTFTTSIPIDISE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -