Spip000826.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- br_1
- Assembly
- GCA_905187475.1
- Location
- LR994574.1:12531978-12533401[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-14 2.5e-11 43.2 0.0 3 43 289 329 287 331 0.91 2 3 0.013 29 4.6 0.0 27 37 360 370 351 375 0.87 3 3 2.6e-18 5.8e-15 54.9 0.0 2 40 397 435 396 438 0.92
Sequence Information
- Coding Sequence
- ATGAACCACCTAAAGTGGATGGGCCACACGGCAACCATCCTCGATATTCAGAAGAGCCTGAAAAATGACCTGGCCACCTGTGATATTACGCTTGCCTGCCGTGGCAAATCGGCCAAGGCACATCGGTTCGTGTTGTCATCGTGTAGCGACCTCCTGCGGGATCTCCTGGCCGATGTTCCGATTGGTCAGGAAGCCACAATCATGGTCCCCGACGTGAAGGGCGCCCTGCTCGACTGTGTACTGAGTTTTATCTACATGGGCGAGACGAGCCTGTCGTCGACAAACCTCTCCGAATTTCTCGAGGCCATCAGCATACTGGGGATCAAATCGGCAATCAGTTTCGAATGTGCGAACAGTAGCACAACAAGCAATATCAAAAATAATGTTGCTGAAATGACAGAAATGGAAGAGGAACTGATGGAAGCCGAACCGGATCAGGAAATTGTTGAGAAAGACGATGAAGAGGATCAAGCAGTCGTCGAGAACAACAGCGTGCGCGAACTGGAATTCCTGGAGGTCTACAATGAACAGGAGAAAATCAGCTACACCATCGAGAACATAAATCCCAGCAATGCCAACGAGTACATCCTCACAGAGAGCTCCGGGACGTTCACGCTCACACAGAACGCGAAAATCGATGGCAGTGAGGTGGGAGCCCTGGTGGAGAAGGCCGACGAGGACAACCCCATGATGGAGCACTACGTCGGCGATCCGATAGGCGACAGCAGCCAAGGTTCCAGCACAGAAATGAAAGAAGCGAAAAGCTGTAAAAAACTCAAAGATGAATTCAGTGAATTTCAAGCGCTCAGCCCCGTCGATGCAAAGCCTTATCAGAATTTTAGTGAGTCACAGTCGGCGCGCGTCGAGGCGTTAGAGAACGCCGTCCTCGCCGTGGTCGATGAGGGCATGAGTCTACAAAAAGCCGCCATCAAGTATAGCATTTCCAAGACCGTCCTTTGGCGGAGAGTGAAAAAGCACCCGCTCTACATGAAAACCACCCGCGAGAATCCGCTCATAACAGCCGCATGCGAACGTTTGAAAAACGGAGATTCCCTCAAGAGCATAAGTCAAGCCTTGGAGATTCCCATGTCCACGTTGCATCGCCACAAAGTGCGACTAGCGCAGGAGGGTCGACTGCCAGAGTACGTCACTTTCAAGAAGCGCGGGCCCATGTCCAAGGAAATGCTCAGAGAAAAACTGACAAAAGCTGTGCAGGCTTGCATCTCCAATGGCATGTCACAGAATCACGCGGCAAACGTGTACGACGTTCCAAAGAGCACCCTGTGGCGGCATCTACAGAAAAAATTGTACCGGGGCGATGATCCAAGCGGTATAAATATTAAAGAGGAAATAGTTTTACCTTAG
- Protein Sequence
- MNHLKWMGHTATILDIQKSLKNDLATCDITLACRGKSAKAHRFVLSSCSDLLRDLLADVPIGQEATIMVPDVKGALLDCVLSFIYMGETSLSSTNLSEFLEAISILGIKSAISFECANSSTTSNIKNNVAEMTEMEEELMEAEPDQEIVEKDDEEDQAVVENNSVRELEFLEVYNEQEKISYTIENINPSNANEYILTESSGTFTLTQNAKIDGSEVGALVEKADEDNPMMEHYVGDPIGDSSQGSSTEMKEAKSCKKLKDEFSEFQALSPVDAKPYQNFSESQSARVEALENAVLAVVDEGMSLQKAAIKYSISKTVLWRRVKKHPLYMKTTRENPLITAACERLKNGDSLKSISQALEIPMSTLHRHKVRLAQEGRLPEYVTFKKRGPMSKEMLREKLTKAVQACISNGMSQNHAANVYDVPKSTLWRHLQKKLYRGDDPSGINIKEEIVLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311727;
- 90% Identity
- iTF_01395937;
- 80% Identity
- iTF_01395937;