Spip005544.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- -
- Assembly
- GCA_905187475.1
- Location
- LR994573.1:31171526-31187774[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8e-11 3.9e-08 33.0 0.0 1 38 266 304 266 309 0.89 2 4 1.5e-13 3.3e-10 39.6 0.1 2 39 321 358 320 361 0.94 3 4 1.7e-18 3.7e-15 55.5 0.0 1 45 375 420 375 420 0.98 4 4 1.2e-20 2.6e-17 62.4 0.0 1 45 427 472 427 472 0.97
Sequence Information
- Coding Sequence
- ATGGTCAAGGGCCTTCTGCGGACAGCTGAGCAATTGAAAATCAAAGGGCTTTGCGAGACAGCCGAAAGTGTTGATGATATCTCAGAGCCAGCAATAGCTACCATCACAGTGTCGGAGAATATAACGCCGGCGGTTGCTGGGAATATTGTTAATCCAGCACAGGCCGTCAGCCAACAGAGCTCTGAGGACTCCGATTCGGATATCAAGCCAACGGCACAGAAAATCTGCAAAACCGAAGCGGGCAACTCACCGACATCGAATAATGGCAGTGTAACTGTCGCACAGGGAACAGCAATTGTGACACAAATCGTAGTAGCACGCGACGAAAAAAAAAACATGACCAGTCTAGGAATGGGAATGAACGGCGGTCTCCTCGGAGTACCAATGGGTTTCTTAGATTTCGCACCTGAACCACCAGCACCGTCAGCCACGCCTGTTACAGTGACGGAACATGTTGACTTGTCGTGCAATCCCAGTACGGATACCAGAGACTTATCAAATCCCACCGAAGCGCTCGATATTGACAATCATTTAGCACAACATATGATTCAACGGCTTGATCAATCGCCGATGCATACGATCCACCATCAATCATCGACGGGCGATGAGAGAATGATAATTACACCGGAAATAGTCACAATGATGGCAACGGGTCATATGGATATATACTCAGATGCCAGCGAGGATTCATTGATGATTGCGAATGGTTCCCCAAATGACAATAACGAGCCACACTATACAAATTTGGACCAACCACATGATAAACAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGTTTGACGAAAGCCTCTGTGACGTATGGTATCCCATCGACAACATTGTGGCAACGTGCCCATCGTATGGGCATTGAAACACCCAAAAAGGAGGGCGGTACCAAATCATGGAATGAAGATTCGTTAAATAGTGCACTGGAAGCATTGCGAACTGGTCAGATATCAGCAAATAAAGCTTCCAAGGCCTTTGGTATTCCGTCCTCGACATTATATAAAATTGCACGACGTGAAGGTATACGATTGGCGGCACCATTTAATGCGGCGCCAACAACATGGACGCCAGAAGATTTAGAACGTGCACTAGAGGCAATTCGAGCTGGTCATACATCCGTCCAAAAGGCTAGCTCTGAATTTGGAATACCTACAGGCACACTTTATGGTCGCTGTAAGCGCGAGGGTATTGAGTTATCGCGTTCAAATCCAACACCATGGTCAGAAGATGCTATGAATGAAGCATTAAACTCTGTTAGAGTCGGACAAATGTCTATAAATCAAGCGGCTATCCACTACAACCTTCCGTATAGCTCCCTTTATGGTCGATTTAAACGCGGCAAATACGACGTTTCGAATACGAGCGCCTCATCAATCAACAACACGACAGGCAACACAAGTGGAAGCATTGAAATAATCGAGCATAGTCCAGAGAATTCGTTACACATCACTCCCGAGAGGAGTTGA
- Protein Sequence
- MVKGLLRTAEQLKIKGLCETAESVDDISEPAIATITVSENITPAVAGNIVNPAQAVSQQSSEDSDSDIKPTAQKICKTEAGNSPTSNNGSVTVAQGTAIVTQIVVARDEKKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHTIHHQSSTGDERMIITPEIVTMMATGHMDIYSDASEDSLMIANGSPNDNNEPHYTNLDQPHDKQGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVSNTSASSINNTTGNTSGSIEIIEHSPENSLHITPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -