Spar009032.1
Basic Information
- Insect
- Syrista parreyssii
- Gene Symbol
- Zfa
- Assembly
- GCA_030142615.1
- Location
- JARQTG010000259.1:1122278-1125365[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.43 28 5.4 0.3 1 21 534 554 534 557 0.84 2 8 8.7e-06 0.00057 20.2 0.3 1 23 564 586 564 586 0.96 3 8 6.3e-05 0.0041 17.4 4.9 1 23 592 614 592 614 0.98 4 8 0.005 0.32 11.5 0.2 1 23 634 657 634 657 0.95 5 8 8.5 5.5e+02 1.3 1.0 2 12 664 674 663 675 0.85 6 8 3.4 2.2e+02 2.6 0.5 3 13 712 722 711 723 0.89 7 8 0.49 32 5.2 0.0 5 20 742 757 741 759 0.91 8 8 5.9e-05 0.0038 17.5 3.7 2 23 768 790 767 790 0.96
Sequence Information
- Coding Sequence
- ATGACGTCTTCACGGTCGACCGTATTTAACAGAATATGCCGTACATGCCTAAACGCTGACGGTGAACTGCTTcccattttttcaaaaggacAACATGTATCAAATTTGCCGAAGAAAATTATGGCCTCTATTCACTTCAAGATTTCGGAAGATGATGAACTTCCGAAAATGATGTGTAAGAAGTGTATCTTTCTGGCGGATTCATTTTATTGCTTTAAACAACAGTGCGAATcggcaaatgaaaaattgaagaaattctaCAAGATGATGACTGAAGGTAATTTGGGGGCTCATTATGGGAtggatgaatatataaatcataatatttatggCGGTCCGTTCGAACTTGACACGCGTTATAAAACTAATAAAGAGAACATCAATTCGGATAACGCTTACGACAGCGAAGATGAATATTTCGTCGAGTACATCTCGGAAGAAGTTAGAATTGAAGTGGAAAATGCTTTGAAAAGGAAGCGCGATGCGCGACGTAAAGTTAATATGGAGAGACTGTCGgagattattaaaaacttGGAAGATGTAGAAGTTGTACCTGTAAGCACGTGTAGGGCAATTTCAAACTCAAGGGGTAAGAATACAGACAAACAAGACATCGTAGTATTTCCGCTAAAGAAACTAAGTAGcactaataatatttataaggaTGTTGCTACGAGAAATCAAAGGATGAACttgatgaaaagaaaaatttcttcaagttGCGCCCCGGAAAAAAGGCACTGCCAcggtgaaaagaaaaataaagtctctTCGATAAAAGATGATAGTAAATGTTCAAATGATGTCAATTTTACGGAAACGGGACGAATAGTATCGGTGAAAGATCACCCTATTAAAATACTGGCGATTGATGACACTGTcagtaataatattgtaatggATCAAAACCACATTGGTGAAACACATAACCAAGTAACTGTGGGAATGGAAGTTTGTCAAACAAATGATACTACTCAAGACACAGCCATGCCAATTCAAATTGTACAAGAAAAAGGTATTGGTTCAAGAGCTAAACAGAGGGAACATGGTTTGCAATTGTCCATTCTTGAAGGTaatgaagaaacaaataataagaaagagCAATCTTTAAATGATAGTGAAACCATTCTGCATGAAATGGTAGATGGTCTGCAGAAGAACCCTAATGATAaagctgaaaaagaaaaattaaattttcatctagAGACAGATGAAGATCATGTACAAGCTTTTGCTGGAGAATTCAAAACGCCAAAAAGTCTTGCGAGTGTTGTCAATGATGTTGATGAGAAGAAAAGTACCATAGACATGTATTCTAAAACTGATGATACAgttgatattatttacatgTCCAACAAGGAAAATTCGGAAGACGACAtaacaaaagaagaaggatTGCGGTGCTTAACAAATGTAACagacaaagaagaaacaaatgtGTCTGAAGACAATCGAGATTTTAAGACAATTGGAGAGGCCAAAGAGTGTCAAGAGGTGTATCCCATTGAAGAAgtcagaaagaaagaagaatttcTAGTAATTGCTGATTTGGAAAGTCAAGGCACCAAGCTTAAAATACTTGATGGCAATTTAAACCTGTACCAGTGCACAATCTGCAAATCAAATTTTGCATCAATGCCAACTGTCTTGAAACACAATATACAGGAACATATGACAAGTCAAAATGATTATTCCTGTTTAATCTGCAAGAAAGTCTTCAAAGACAAATCATTACTGATTATTCATGTAGAGCAACACAGTGACTTCAAGTCCTACCGATGTTCCTTTTGTCCAAAATCATTCACATTGAAGAAGGATTTGAAGAAGCATGTTAATCATCACTTCAATGAGAAGTCAGTTTTATCGACGCATCGGTCGGTTCATTCAAGCAATCCCTCATTTATCTGTCCAACCTGTGATCTTGCCTTCAGTAGTGAAAGCAAGCGAGACACACATCTGGCGACAATGCATGATCAATGTGCTACAATAACCTGTGAGTACTGTAAGacacaatttccaaaaaagcTCATTGCCAAAGTTGATGGAAAAGTTGATGATGTTCACGGATCCTGTGACAAGAAATTGAGTCAACAATCTTGTTCGAAGACTCAGCTGATTGATCAAACCTTACTTTGTCCTTCCTGTGATAAACCTTTTGGTCAGAAGAAAATTCGCCATGATCGCCCTTCAACCCATGCCAGTGCAAAATTGTACAAGTATAATGAATGCTCAGCCAGTTCCACGGATTCTTCTGCACTTAAACGACATGTAGCATTGTACACGAAGAAACTTCTAACACTTTATTGCAACaagtgtaaaaagaaattcgttaaTGTTCATGAATTAAGGAAACACTTGAGAGTTCGTCACAGAAAGTTCTCTCGATCCAAAGAAGACAGTTTGTCAGAAAATGCAAAGGAAATAGCAGATGCGAATGGAGAACCtgagaaaaagtcaaagataGGGCAAGATGTTACCTGCAACCGAGTTCAATTGGATGTGGCTGGAAGTGACAGCCAGGGCAAGTCTGAAAGGTATGACCAAAATGATGATTTCAATGAGGAGACACAACCTCCTGTGGCATCTGAAATGATTTTGGAATAG
- Protein Sequence
- MTSSRSTVFNRICRTCLNADGELLPIFSKGQHVSNLPKKIMASIHFKISEDDELPKMMCKKCIFLADSFYCFKQQCESANEKLKKFYKMMTEGNLGAHYGMDEYINHNIYGGPFELDTRYKTNKENINSDNAYDSEDEYFVEYISEEVRIEVENALKRKRDARRKVNMERLSEIIKNLEDVEVVPVSTCRAISNSRGKNTDKQDIVVFPLKKLSSTNNIYKDVATRNQRMNLMKRKISSSCAPEKRHCHGEKKNKVSSIKDDSKCSNDVNFTETGRIVSVKDHPIKILAIDDTVSNNIVMDQNHIGETHNQVTVGMEVCQTNDTTQDTAMPIQIVQEKGIGSRAKQREHGLQLSILEGNEETNNKKEQSLNDSETILHEMVDGLQKNPNDKAEKEKLNFHLETDEDHVQAFAGEFKTPKSLASVVNDVDEKKSTIDMYSKTDDTVDIIYMSNKENSEDDITKEEGLRCLTNVTDKEETNVSEDNRDFKTIGEAKECQEVYPIEEVRKKEEFLVIADLESQGTKLKILDGNLNLYQCTICKSNFASMPTVLKHNIQEHMTSQNDYSCLICKKVFKDKSLLIIHVEQHSDFKSYRCSFCPKSFTLKKDLKKHVNHHFNEKSVLSTHRSVHSSNPSFICPTCDLAFSSESKRDTHLATMHDQCATITCEYCKTQFPKKLIAKVDGKVDDVHGSCDKKLSQQSCSKTQLIDQTLLCPSCDKPFGQKKIRHDRPSTHASAKLYKYNECSASSTDSSALKRHVALYTKKLLTLYCNKCKKKFVNVHELRKHLRVRHRKFSRSKEDSLSENAKEIADANGEPEKKSKIGQDVTCNRVQLDVAGSDSQGKSERYDQNDDFNEETQPPVASEMILE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -