Spar007283.1
Basic Information
- Insect
- Syrista parreyssii
- Gene Symbol
- -
- Assembly
- GCA_030142615.1
- Location
- JARQTG010000209.1:4488533-4494117[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00032 0.021 15.2 2.6 2 23 749 771 748 771 0.94 2 9 0.029 1.9 9.1 0.3 3 23 801 821 799 821 0.94 3 9 0.0011 0.069 13.6 0.8 3 21 917 935 916 936 0.96 4 9 2.5 1.6e+02 3.0 1.3 2 23 953 974 952 974 0.95 5 9 0.12 7.6 7.2 0.5 1 19 1061 1079 1061 1082 0.94 6 9 0.00023 0.015 15.7 3.0 2 23 1101 1123 1100 1123 0.96 7 9 0.00014 0.0089 16.4 5.8 1 23 1140 1162 1140 1162 0.98 8 9 0.0021 0.14 12.6 0.3 1 21 1168 1188 1168 1189 0.92 9 9 0.00044 0.029 14.8 1.0 1 23 1410 1432 1410 1432 0.98
Sequence Information
- Coding Sequence
- ATGTCAGATATTCCGAATGATTTAAGTCATGAATCATTGGCAATAATGGAGGACGAAAGCATTAAATCTACCATGGACACTAAAAGGGaggaaaataatttagatTCAGACACATGTCATTGGAGAAATATGCTGAAGTTATGTACACCACTATCAATACGGTTAACACATTTATCAACAGACATTTTGAAGAAGTTCACAGTACCTAAGAAGAATGTTACACAGAGGCCAACAGGTAGCTCAAAAAATTTGGTAATGGACTATAGGGATTACCGTTCcagaaaacgaaagaagagGAATGTCAgtgcaaaatttaaatacgCAAGGAAAAAGCAAAAAACGATGCCTGATAAAACCTCACATCCCGAtaaaagtgatgaaaattCCACACTGAAATCTTGTACTGTTACTTCAACAAGTAATGATGCATCTACCTCTCCAGCTCATGTATTTGAGGAACATATAGGACCTGGAACAATTGTTAATGAATCTGCAATGGACAAAGTATTAGATGTATCTATCTCTATGGAACTCACAGGAAAAGATGATACATCCTCAGTCCAATGTCTGAATGAGAACACAGAAGAGCATACccaagttgaaaaaaatgatactgaAACAGAAGAATCGCGATACCAGGAATATGTGCGTAACATATTAATGGAATATTGCTATTCTTATGGGAACTTGTCTCATATGTCAAAAGAATTGAACGATAATGACCATAGTAGTGATACGAAAAGTACTACTGGAGATAAACGACCAAGTAATGAGAATTGTCCTGATGACCAGATTCCCTCCTGGagttcaagaaaaagaaaaaaaaaagtacaattaaatTCACAGGACACAGCGATTGTTAGTAAAAAATCGCCTAAGAAGAAACAACAACaaagaaatcagaaaaaaatcacATCAACACCAATACAAGATGATAGCAGACCACCAGTTTTTAGGCAACAGGCTAAATCCCCCAGTTGTACTCCACCAGCAGCTGAGCAAGAGACAGGAAAGACTAGTGCTAACACCtccaaagaattaaaaattcagttAATGAAGTTAGAAGATATATCTGGCATGTATGCTCCAATAGAATCTACAGATGTGATTccagaaaatgaaaaggatgtcgcttcattaataaataatgatactGACTCTGTAGTTGGTTCAGAAGGAATTAGCGATGCAGAGACAGTAGTGAATTCAATGTTTACTGAGGAAAGCAGAAATGATATTGAGATTGAAGAATCTAATCATGGCTTGGATCCTACTCCGATAATAGcgcgtgaaaataaatcagtTTCTGATTCTGAAATTACGGACGTTTCTAACGAAATGAATTTAGATATTGTTGAAAAGCAGCAAAAAATGTCTATGTCTTCAGATGAAACAGTGCACTGTGACAGTGAAGTGGATAGTTGTATCAATGAAGTAGATAAAGCAATTAATGCAGACGCTATGTTAAGATTGAAGTATAACATTAAAAAGGACCCAGTTGtacttttggaaaaattgaatcctATATATAGTTATGTGTCAACGAATGTGCATCGATACGATCATGATGTCAGCGACGTTCTTGAAGAATCCGACTCGTCCAGTAGTGATTCGGACATCTTTATGTTTGTGAAGAAACGTAAATCGCCACATGTCAGGAGTCGTCGAATATCCTCTTCTGATGAAGAAGAGCAAGTTTCTCCTATCCAATCGGTGTCTACGCCGGTTtcgaataaagataaagatggAAAGCATACAAGTCCTATTTCCAGAACTTCAAACACAAGGGAAGAAACATCGGAAGTATTTGTTACTAATCAAACTCCAGGTATTTCGAAAAACACGTCCTTGGAGGAAAGCGAACATGTTACAACCATTGCCACtccagaaaagaaaaaagtttcacAACCAGAAAACACGAACAATCCTTCCCCTAAAAAAGTTATGCGAAATCCtgacaatacaaaatataattcagaTTCTTCGGATTCGGATATCCAGATATTATCGATGACAATGAATTCTAATATTTCACCAAAAATCTGTGGAAAGATTGGAATGAGTTCACCCAGCACTTCATTGAATCCTAAAAAATCACCTTCTAAGTTATGTTCTGATAAGACTGGTAGTGCAATGGTGGCACATACAAATCAATCATCAATAGCAAATACACAAACACCAGTGGGAAACACACAAACACCATCGAGTTCCAATATCACACCTGTTAGTACAGCATCAAAGCTCAGTTGTCATATTTGCAAGCGGAAGTACGTGAGGAAGAGATCACTCAAGATCCACATGGAGTTGCAACATAAGAACGATCCCAGTGAGAAATCTTCCAAACCAAGCACAACGTCGTGCACAACACTAGAAAACAATAGTGCGGTAGAGTGCCTGGACTGTGGTATAtgttcaagaaaatttatatctaagAAAGCATTCGTCGACCACGTCTTCAGCCACCAATCAGAGGCACAGCAAGATTACAGAATAGCACCTGATAAACGTTCACGAGCAGTGTGGTTGGACCTTTACGGtctaaaagataaaaatccaGAAGATCAACATGTGGAAAAGTccaaaaaggacaaaaaagaTCCATCCAGTGACAAACGGCTTAGAAAGGAAGAGCAGATTATAACTAGCTTGACAGCTTCTCCAAAAGAAGTAGTTGTATGTCCATGTCATCCAAATAATGGGCTGTTAAATAAACAAGGTTCTAGcatttatatagaaatggTGTTACTGTGCGAATATTGTAATGTTGTCTTTCGGAGGAAAGAGTGCCTGGAGACACATTATCGTGTGAGTTCGCAGTGTTCCATAAACAGGACAAGTGGCAGAGTACCAAAGCTGTACTGCACCGCGTGCAATGTTACTGTGGAGTCCTTATCTGTCTTGTGTCATCATCTTGAGATGCATCCACGTCTCCAGATTCATGGCACAGCAACCTTCCTATGCAACATCTGCAAAGTGATCTTCTTCGGCATTGGAAGTATATTTCGCAGACACTGGCTTAGTCATCTAAAGAATCCTCTATTTCTGGCTAGTCGTCATTCGTTCCCTAAGATATCTGTTATAAAAGCACTTGGAAATTACAACGTATCTGCAGAAGAAAGGATACAGGTGGCTCAGGCTGCTGAACTGGCTGAAAACATAAAATACGTTCTCATCGCTGAGCACGTATGTCGTTATTGTAAATTACCCTTTGGCTCTGAAACTGATCTTACAAATCATTCAACATCCTGCTCTAGCATGAAGAATACATCTAATGCTGCTAATCCATCGAATGATGGCATGACATGTTCAACTTGTCAGAAAACTTTTACTGATAAGAGCAATTATGACATTCATATTGATACGTGTCATGCGATAGCCGATGGATCTTCTCCTGCAAATTCAAAGGACATGACTAATTATAGTTGTAACATTTGCCATAAGACATGTCAAACGGAAGATCAGTTGACGCGGCATCAAAATAGTCACAAGAGTGCTGATCTGTTCTTATGTTCCCGTTGTGGTATCTCTTTCAGCACAGTCGAGCATTTTACTACCCACATACAAGCCACGTGCACAATATGTGACAACCACTTCGACTGCCAAAAACGGTACCAGGATCATCTGTCAAGCCACTTCACGAATCTCGCAATAATTGAGGAGCCTCAAGAATGTTCAACAAAAACACATACCGCATGTGAAACAAACATGGAAGTAGATAAGAGCACCACGCAAAAGAATCATGTAGAAAATAAGGAAGAGGCAGTGAGTTCAGCCAGTTCGGTTCTTCAAGCAAAACAGTCTGACCAACGACATCAGTCAAAACCACAAAAAGAAGTTGGATATCTGATAATCAGAGAAGTTTCAAAGTCACCCAAGAAAATAGTAACTATCACTTCCGAAGGCAGCACTTCGAATACATCATGTATCTCTAAAGAATCTGCACAGGAAACACGTACTCGCAATGAAATTCTATCTACTAATAGCGTCACGGAAGCTGTCATGAAGATCGTTGAAACTCAATCAGATAATCAAGAAAAGGATCCCATGGCTTCAGGTGGAGCAAAAGATACAACTACAACTATGGATACAGAAGTACCAACGGATAGTTCAGAAACAAGTTCTACTATTGGGATGCCATGCAGctcaaagaatgaaaaaacaCCTAAATCAGGATTTTTACGCGTGAAAAATATGTCGGAACTTTTGGAGAAGCGTGATAAGAAGTCGTACATATGTAAAACATGTGGATTATCATGTACGTCTGTTGAGAATTTGGCAGAACATTCAAGAACGCACATCACTTGCCAAACGGCTAATGAAAACATACCGTCGGTCAATGAAATTCAGCGTGTCGTTGATGAGAATAGTTTACGATTACTTAATCAATATATAGTGTCGAACAAATTAGTTTTGCAGCCAACGAGAAGCAATATTACTAACGTCGGTCCTAACAACTTTACTACCGAAATGAACACTAATGTCAATAATACACGACAAGCTAATATCGACCGTAATCGTGGCAATACTGCCGCTTTTATTCCGTGTGTGATATGCGGTACAATATTCAATGCCACAGAGAATCCTATTCATTGTCAAACAGCAACAACAAGTACAGGACAAGTTAATATGAATACCAACGCCGCAGTTTATCAGCCCGTtgcaaataatgaaatacaaagtACTGGAAATGCAACTACGTTTAATACAGCCGTCCGTTGTTCTCCATTCGTAACGTATACTTCAAATACAATTGGAAGAGAACTACCTCTCAGTGCTGTAAACAACAGTGTCAacgtaaatttaaatatgaacCAACAAGTGGCACAACCACCTCCAAATTCTCAATGGAATAACTTAACTTACAGTAACACGAATGTTCCTATTGTGTACAGTCATGTTACACAATGTACTCCACCTTCTTACTCAGCTCCGAGTAATATCCTTCCTAATATTCTTCCAAAGACTACTAATGGCACTACTACTGTTACCACTAACTCTCACTGCATTGTTCCAAATCCTCCAATGCGTCCTCAGTATCCTTACAGAGCAGTCAGTCAATCAAGTAATAAATCTATTGCTGCGAGACGCTccacttcttcctcttcgtcttcaGCTTCATTCGCTAATAACAACGCGCAGCCTATTACTACTGATGCATCAATTGGAAGTACAAGACCCTCAGGATATTCGATGAACTACAATAATCTAAATGTTCCATTACAACAGTCACAATCAGGTATAATTTTACGAACAGAATCCCATGTGACACGACAACCTGCACACCAATCGATATCTCAGACTATACATCACCTGCCTGAGCTACCAAGTCAGCTAGTGTCACAACAACCAGCGCAATTATGTACTTTCATTACTCAACCAAAACCAACGCAAGCTGGCAAACAGAATTCGCAGCAAACAACCACAGAACAACCAAACGTGGATTCATCCAGCAGATCAGTCTTCTCTTGTCCCTCCTCCTCGCAAATCTTACTGTACCTCAACCTCTGA
- Protein Sequence
- MSDIPNDLSHESLAIMEDESIKSTMDTKREENNLDSDTCHWRNMLKLCTPLSIRLTHLSTDILKKFTVPKKNVTQRPTGSSKNLVMDYRDYRSRKRKKRNVSAKFKYARKKQKTMPDKTSHPDKSDENSTLKSCTVTSTSNDASTSPAHVFEEHIGPGTIVNESAMDKVLDVSISMELTGKDDTSSVQCLNENTEEHTQVEKNDTETEESRYQEYVRNILMEYCYSYGNLSHMSKELNDNDHSSDTKSTTGDKRPSNENCPDDQIPSWSSRKRKKKVQLNSQDTAIVSKKSPKKKQQQRNQKKITSTPIQDDSRPPVFRQQAKSPSCTPPAAEQETGKTSANTSKELKIQLMKLEDISGMYAPIESTDVIPENEKDVASLINNDTDSVVGSEGISDAETVVNSMFTEESRNDIEIEESNHGLDPTPIIARENKSVSDSEITDVSNEMNLDIVEKQQKMSMSSDETVHCDSEVDSCINEVDKAINADAMLRLKYNIKKDPVVLLEKLNPIYSYVSTNVHRYDHDVSDVLEESDSSSSDSDIFMFVKKRKSPHVRSRRISSSDEEEQVSPIQSVSTPVSNKDKDGKHTSPISRTSNTREETSEVFVTNQTPGISKNTSLEESEHVTTIATPEKKKVSQPENTNNPSPKKVMRNPDNTKYNSDSSDSDIQILSMTMNSNISPKICGKIGMSSPSTSLNPKKSPSKLCSDKTGSAMVAHTNQSSIANTQTPVGNTQTPSSSNITPVSTASKLSCHICKRKYVRKRSLKIHMELQHKNDPSEKSSKPSTTSCTTLENNSAVECLDCGICSRKFISKKAFVDHVFSHQSEAQQDYRIAPDKRSRAVWLDLYGLKDKNPEDQHVEKSKKDKKDPSSDKRLRKEEQIITSLTASPKEVVVCPCHPNNGLLNKQGSSIYIEMVLLCEYCNVVFRRKECLETHYRVSSQCSINRTSGRVPKLYCTACNVTVESLSVLCHHLEMHPRLQIHGTATFLCNICKVIFFGIGSIFRRHWLSHLKNPLFLASRHSFPKISVIKALGNYNVSAEERIQVAQAAELAENIKYVLIAEHVCRYCKLPFGSETDLTNHSTSCSSMKNTSNAANPSNDGMTCSTCQKTFTDKSNYDIHIDTCHAIADGSSPANSKDMTNYSCNICHKTCQTEDQLTRHQNSHKSADLFLCSRCGISFSTVEHFTTHIQATCTICDNHFDCQKRYQDHLSSHFTNLAIIEEPQECSTKTHTACETNMEVDKSTTQKNHVENKEEAVSSASSVLQAKQSDQRHQSKPQKEVGYLIIREVSKSPKKIVTITSEGSTSNTSCISKESAQETRTRNEILSTNSVTEAVMKIVETQSDNQEKDPMASGGAKDTTTTMDTEVPTDSSETSSTIGMPCSSKNEKTPKSGFLRVKNMSELLEKRDKKSYICKTCGLSCTSVENLAEHSRTHITCQTANENIPSVNEIQRVVDENSLRLLNQYIVSNKLVLQPTRSNITNVGPNNFTTEMNTNVNNTRQANIDRNRGNTAAFIPCVICGTIFNATENPIHCQTATTSTGQVNMNTNAAVYQPVANNEIQSTGNATTFNTAVRCSPFVTYTSNTIGRELPLSAVNNSVNVNLNMNQQVAQPPPNSQWNNLTYSNTNVPIVYSHVTQCTPPSYSAPSNILPNILPKTTNGTTTVTTNSHCIVPNPPMRPQYPYRAVSQSSNKSIAARRSTSSSSSSASFANNNAQPITTDASIGSTRPSGYSMNYNNLNVPLQQSQSGIILRTESHVTRQPAHQSISQTIHHLPELPSQLVSQQPAQLCTFITQPKPTQAGKQNSQQTTTEQPNVDSSSRSVFSCPSSSQILLYLNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01131153;
- 90% Identity
- iTF_01395473;
- 80% Identity
- iTF_01395473;