Basic Information

Insect: Syrista parreyssii
Gene Symbol: -
Assembly: GCA_030142615.1
Location: JARQTG010000209.1:135125-143161[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3.3e-05 0.0021 18.3 3.9 1 23 437 460 437 460 0.97

2 8 3.1e-06 0.0002 21.6 2.4 1 23 467 489 467 489 0.97

3 8 0.00071 0.046 14.1 1.4 3 23 497 517 495 517 0.98

4 8 0.00075 0.049 14.1 3.9 1 23 525 547 525 547 0.99

5 8 9.7e-05 0.0062 16.9 0.2 1 23 617 639 617 639 0.97

6 8 9.1e-06 0.00059 20.1 0.8 2 23 645 666 644 666 0.97

7 8 6.7e-07 4.3e-05 23.7 0.7 1 23 672 694 672 694 0.95

8 8 0.0003 0.019 15.3 1.0 1 23 700 722 700 722 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3.3e-05	0.0021	18.3	3.9	1	23	437	460	437	460	0.97
2	8	3.1e-06	0.0002	21.6	2.4	1	23	467	489	467	489	0.97
3	8	0.00071	0.046	14.1	1.4	3	23	497	517	495	517	0.98
4	8	0.00075	0.049	14.1	3.9	1	23	525	547	525	547	0.99
5	8	9.7e-05	0.0062	16.9	0.2	1	23	617	639	617	639	0.97
6	8	9.1e-06	0.00059	20.1	0.8	2	23	645	666	644	666	0.97
7	8	6.7e-07	4.3e-05	23.7	0.7	1	23	672	694	672	694	0.95
8	8	0.0003	0.019	15.3	1.0	1	23	700	722	700	722	0.98

Sequence Information

Coding Sequence: ATGTCCTCCCTTGATTATCTGGATCTGTGCCGGCTGTGTCTCGTGAAAGATCGTGTCTCTGTGCCGATTTTTGAAGGGGAAGGTGACGTTCGGCAGATATTCCTCAAGATCGCTGCCTGTCTGCCGGTCAAGGTTGCCAGAGAGGACAAATTACCCAAGAAAATATGTGATGACTGTGTGTATAaagtagaattattttaccaattttGGAATACAACGGCCAATGCTGAAAAGCAGCTTCTACAATGGCTGGGAGAAGTTGGCCTGGAGGACAAACAGGGTTATGTCACCGGAGTTCTCAACCCGAGTGTGATGAAGCAGGAACAAAACAGTGAGAGTAGGCTAGGCGGTAACGTGATGCAGCAAGTGAGCGCGCACCAAGCTAACATGGGTGGTATGACCATGATAGACAATATGGGCTTGGGGATGCCTATCATGATACCCAGTGGCAATCAGCAACAAATCACCTCAGTTCCTATGGACACGAGCGGTAACGCCGTTCAGGCGGATCAGACAGTGCGAGCAGTGCaggcggtggtggcggtggcgggTCCCAGTGCGCAACCCAATCACCAGGAACAATTAGCGCAGAACCAAGGAAGTGCCAGTGCAACTGCCGGGGCGGGTACCGATCCAAGCACAGCCACTTCTACCGTTGTCACAGCGCCTACCTCGCATCAAGACGACGAGGAGGACACCACTGACGAGGATGAAAACTCCGACGAAGAGTGCGACGCGGACGAAGgCTTACCCGTTAAAGAGGAGAGTGAGGAAGATCCAAGTAATAGCAGAACGATCGAGCCTACGACGTTCGTGAACGTTTCACTAGCGTGCGACGAGGCAGGCCCTTCGGGACTGCAGCAACAAAAAATCACCGAAATGCCTGAAATGTCTATACCCCAGGCAGCCGACGGCGACCCCAAGTCTGGGGAAGCTGCTGAGCTCTTTGGTGGAATATCGGGGATGTTGCGACAAATACTCTCGCCCTCTCCAGAGAGTGGCGAACTCATTCTCGCCGGATACTGCAACTTTATTCCTCTATCCCCTCCGACGTCGACGCCCTTCCTTCACGCAATGCTGCCTCTGACGCTCGAGATCGGCCAAGGAGGCAGCGCGCTCTTACCCAGTCTACACTCCATTACCGAAACCTCGAACGTCCCCGCCGACTCCTCAATCTCGACGGCAAGTGCCTGCAGCATTTCCGCTGGCTCGATTACGTCGAACGCGCCTGGAAACGTCGCTCTTGGCATCGCTACTCCCATTGATCATCAGCTCAACGCAGACCATCGTCGAATGATAAGAGAGTCGCACGTCTGTCCTACCTGCGGTCTTGTCTTTCACACTCGGTCCAAACTAAATTATCATCTGAGAACGCGTCACTCAGATCTCGAACGTAGGTTTTCCTGCGGCATCTGCTCAAAGACCTTTTCAACTCAAAGTCATTTGCGAATGCACGAGGTCACGCATGCCGAGACGAAGCCCTTTGGTTGCGACAAATGCACTGCGACCTTCCGATATCGCACGCTCCTCGAGCGACACAAAAAGGTTCACGACGCTACTCCGGATAAGCCCTATTCCTGTCCCCGATGTCCTTTGCGATTTGAGACGCGTAATACCTACAACCATCACACAAAAACTCATAAGTCTACAAGTAACATCTttaacagcagcagcaacaaaaACAACAGCGGTCGCATCAACGCAACGAGAGCTACTAGGTCAGTTGAAACAACTGGAAGCGGCACTCCTAGTTCCTCGAGCGAGCAGGTACCTAGTGTTTCGGAGCTGACAATGAAGAACGTGGTAGAGGAGTCCGTTGCCGTAGCCGTGGCAGTCGGGAATTCTTCCTATCCCTGCGATTCCTGCAACAAAGAATTCCCGACTCTCGACTCCTTGACTAGTCACAAGGCGATGCATCGCTCGCGTCCACTCGTGTGCGACGTATGTGGCAAGGGCTTCACCCACCGTAAATATTACGTAGTGCATCAGCGCATTCATACTGGCGAGCGTCCGTATCTCTGCGCCATGTGTGGCAAGTCCTTCACTCAGGCCTCCACGCTGACCGTACATCGCCGATATCATACAGGGGAGCGACCCTATACCTGCACCCTTTGCGGAAAGGGCTTCGTCACGCGCACCATTATGCTCAATCACATGAAGAAGCACTGA
Protein Sequence: MSSLDYLDLCRLCLVKDRVSVPIFEGEGDVRQIFLKIAACLPVKVAREDKLPKKICDDCVYKVELFYQFWNTTANAEKQLLQWLGEVGLEDKQGYVTGVLNPSVMKQEQNSESRLGGNVMQQVSAHQANMGGMTMIDNMGLGMPIMIPSGNQQQITSVPMDTSGNAVQADQTVRAVQAVVAVAGPSAQPNHQEQLAQNQGSASATAGAGTDPSTATSTVVTAPTSHQDDEEDTTDEDENSDEECDADEGLPVKEESEEDPSNSRTIEPTTFVNVSLACDEAGPSGLQQQKITEMPEMSIPQAADGDPKSGEAAELFGGISGMLRQILSPSPESGELILAGYCNFIPLSPPTSTPFLHAMLPLTLEIGQGGSALLPSLHSITETSNVPADSSISTASACSISAGSITSNAPGNVALGIATPIDHQLNADHRRMIRESHVCPTCGLVFHTRSKLNYHLRTRHSDLERRFSCGICSKTFSTQSHLRMHEVTHAETKPFGCDKCTATFRYRTLLERHKKVHDATPDKPYSCPRCPLRFETRNTYNHHTKTHKSTSNIFNSSSNKNNSGRINATRATRSVETTGSGTPSSSSEQVPSVSELTMKNVVEESVAVAVAVGNSSYPCDSCNKEFPTLDSLTSHKAMHRSRPLVCDVCGKGFTHRKYYVVHQRIHTGERPYLCAMCGKSFTQASTLTVHRRYHTGERPYTCTLCGKGFVTRTIMLNHMKKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01131079; iTF_00253836; iTF_01473429; iTF_00254593; iTF_01474954; iTF_00252334; iTF_00297818; iTF_00296269; iTF_00293205; iTF_00298584; iTF_01475707; iTF_00295516; iTF_00293981; iTF_00297055; iTF_00253083; iTF_00255346;
90% Identity: -
80% Identity: -