Basic Information

Insect: Syrista parreyssii
Gene Symbol: -
Assembly: GCA_030142615.1
Location: JARQTG010000380.1:1158711-1172438[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.3e-06 8.3e-05 22.8 2.5 1 23 579 601 579 601 0.98

2 8 2e-05 0.0013 19.0 1.5 1 23 607 629 607 629 0.98

3 8 2e-06 0.00013 22.2 0.3 2 23 638 659 638 659 0.98

4 8 7.9e-06 0.00051 20.3 0.1 1 23 665 687 665 687 0.98

5 8 2e-07 1.3e-05 25.3 3.0 1 23 693 715 693 715 0.98

6 8 4.4e-06 0.00028 21.1 2.1 1 23 721 743 721 743 0.98

7 8 7.9e-05 0.0051 17.1 7.7 1 23 749 771 749 771 0.98

8 8 9.8e-05 0.0063 16.8 1.5 1 21 777 797 777 798 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.3e-06	8.3e-05	22.8	2.5	1	23	579	601	579	601	0.98
2	8	2e-05	0.0013	19.0	1.5	1	23	607	629	607	629	0.98
3	8	2e-06	0.00013	22.2	0.3	2	23	638	659	638	659	0.98
4	8	7.9e-06	0.00051	20.3	0.1	1	23	665	687	665	687	0.98
5	8	2e-07	1.3e-05	25.3	3.0	1	23	693	715	693	715	0.98
6	8	4.4e-06	0.00028	21.1	2.1	1	23	721	743	721	743	0.98
7	8	7.9e-05	0.0051	17.1	7.7	1	23	749	771	749	771	0.98
8	8	9.8e-05	0.0063	16.8	1.5	1	21	777	797	777	798	0.95

Sequence Information

Coding Sequence: ATGATGGGCGAAGTAATAAGAGTTTCCGGTCGGGCACCGGATGTTGGGGATTTCTTGCGTGAGGCCATGATATCACAAAGATTTGCAGATGTCTCTTTATGCTGTCCCGGTGGACAAAGATTTCTTGCTCACCGTTTGGTACTTTCGGCCGCCAGTTCATATTTGCAAgAGGTCCTACTGGCGCATAGCCGTGCCACCGGGCACTGCGAACCCATTACAATTATTCTGGCTGAGGTCGAGGGTCCTGAATTGGCGGCCATACTTGGTTTCGTGTATACCGGAAGTGCCGCGGTACCAAAAGGACGACTGGATGCCTTCCTAAGAGCCGCCAAGGCTCTGAGCATTAGATTGCCACCGCTACCGGAAATGATGACTTCTCGTATGGACGATTGCAAAGCGGAGGACTTTAAGGATGTCAAAGTGAACGCGCGCTATCTTAGATGCGAGCAATATCCTTGTCATGACGGTTGGTGTCACGCAAGGACCTACGACAGGGATTACTGTTCTCCAAATTACACGGCCAAGTGTCATCGCGCGTTGCCGATGTCCTGTGAAGGAGCAATGAGCAAAGAGATTTACGACGCGTCCAAGCAGGAGTCACTCGATTCGTATCCCGTCGTAATGATGGAGGCTCCTTACGCGACTAAAGATACAAACGGCCGaacaattttggaaaagaatttgaaCCGACTGGATTACCCGAGGGAACCAGTGAGTGaaagaattttagaaaaagtCAACGAAACTCAGCCCTTCGGCAAGATCCACGAGGCCAAGGACTTCTCAATGGGACTATTGGGAGCTTCCgtaaaaattatcgaaactCATGGAACATCCGGTAACCTTCAGAATCCATCCACGATCTATGAACCTTCGCGCGAGTCTGATCGGATCCTAGAAAATTTACTCGAATCGCGTGTTCCTACGATCCCGTCCAAGGTCGAGCCTAAAAATCGACAAGTCTCTGCGCTACAGATAGGCGAAGATTTGACCTGTCGCGAAAGATGCTGCAGATGGAAATATCAAAGAAGACACGTGGCCAACCGAGTCACAGCATCCCCATGGAGACAACTAGCCAGGCCACATCATTCCCCAAAAATCCAACCGATAGTACTGCGCAATTATCCCGAGAGGattgATTCGGGAATAACCCGTGATTTTGGACCCGATCGATTCCCACTGAACGCCGGTATAAGTTTAAAGGACCCTTGCAGCACGATTACCGAAAAGTCGTGCGCGCCCGAAATGTTCGAGCGCGACAAACGAATTCCCGACGAATCCGAAATTTACATGAGAAAGGAGGAAACTACTTCGCGTCAAGACTATAGCTCGTGCCAGTCGATTTTCGGAAAAATAACGAGCCAGGAAtgtaattctcaaaatatcgGTGAAGCATCTGcctattatcaaaattcaacCCAAGTCGCGACACCCTCGCATATATCATTACCTACTGTCGATAATCACGCGAACTGCACCGACGGCACAGGAAGCGCGATAATTCTTAACAAAAGTCCTCCACCAATTTTAAAGCCGGAACTGTCGTTACCTGTCAGTAGACTCTGCGACTCGACGCCCGACACAGCCAACACTACAACTAGTACGACGACTGTTTCTACCGTGGATAACGAAAGGCCAAACTCAACTGACAAAAGTCACGGCAAGCACAGTGACAGTAATAACAACGAGGCGTCAACGGGCGATCATCGAATTCCCACAGTAAACACCGACGATCACAGATGCGATCAGTGTGGAAAAACTTTCGTCACCAGAGCCTCGttaaagGTACACAGTCGCACTCATTCCGGCGAAAAACCGTTCCGGTGCGCTGATTGTGGCAAGGAATTTTCGCAATTGCGAAACTACAAGTATCACCGCAGCGTGCACGAGGGTACGCGTGAGTTCGCAGCGACATGTCCCGAGTGCGGTAAATACTTCAACGACCGTGGCTACCTGAGTTCGCACATGAAGATCCACCGTAATCGCAAGGAGTACGCGTGCGGCGAGTGCGGTAAGAGTTTCAATCAGCGAGTGGCGTACAACATGCACGTGCGGATACATACGGGGGTGAAGCCGCACCAGTGCGAGCAGTGCGGCAAGGCGTTCTCGCGGAAGATGCTGCTGAAGCAACATCTCAGAACGCACTCGGGAGAGCGTCCTTATCAGTGCCAGGTCTGTCACAAGGCATTTGCTGATAGATCGAATATGACCTTGCACACGAGACTGCACTCGGGCCTTAAGCCTTATCAGTGCACTCTGTGCACCAAGGCGTTTACTAAGAAACATCATCTCAAGACTCATCTCAATTATCATACGGGAACTAAGCCGTACTCGTGTCCTAATTGTTCCTTGAGATTCTCGCAGAGCAGCAATATGCGTACGCATTACAAAAAGTGTACTGTCAATAATCCTAATGGGATACAGGCGAGCGCGGAACAGAGAGTCAGTGCTAAGGATACCGACGCAGCATCCTTGGTCCATGCGACGGGCAGAACTCGTAGCGCTGCACTAACGCCACCTAATTCGGATCAGGAATCCGGTGTATATACGCCCGTAGGGAGAATCATTACGGAAATTAGGCAATCTTAG
Protein Sequence: MMGEVIRVSGRAPDVGDFLREAMISQRFADVSLCCPGGQRFLAHRLVLSAASSYLQEVLLAHSRATGHCEPITIILAEVEGPELAAILGFVYTGSAAVPKGRLDAFLRAAKALSIRLPPLPEMMTSRMDDCKAEDFKDVKVNARYLRCEQYPCHDGWCHARTYDRDYCSPNYTAKCHRALPMSCEGAMSKEIYDASKQESLDSYPVVMMEAPYATKDTNGRTILEKNLNRLDYPREPVSERILEKVNETQPFGKIHEAKDFSMGLLGASVKIIETHGTSGNLQNPSTIYEPSRESDRILENLLESRVPTIPSKVEPKNRQVSALQIGEDLTCRERCCRWKYQRRHVANRVTASPWRQLARPHHSPKIQPIVLRNYPERIDSGITRDFGPDRFPLNAGISLKDPCSTITEKSCAPEMFERDKRIPDESEIYMRKEETTSRQDYSSCQSIFGKITSQECNSQNIGEASAYYQNSTQVATPSHISLPTVDNHANCTDGTGSAIILNKSPPPILKPELSLPVSRLCDSTPDTANTTTSTTTVSTVDNERPNSTDKSHGKHSDSNNNEASTGDHRIPTVNTDDHRCDQCGKTFVTRASLKVHSRTHSGEKPFRCADCGKEFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYACGECGKSFNQRVAYNMHVRIHTGVKPHQCEQCGKAFSRKMLLKQHLRTHSGERPYQCQVCHKAFADRSNMTLHTRLHSGLKPYQCTLCTKAFTKKHHLKTHLNYHTGTKPYSCPNCSLRFSQSSNMRTHYKKCTVNNPNGIQASAEQRVSAKDTDAASLVHATGRTRSAALTPPNSDQESGVYTPVGRIITEIRQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00253719;
90% Identity: iTF_01395253;
80% Identity: iTF_01395253;