Spar010449.1
Basic Information
- Insect
- Syrista parreyssii
- Gene Symbol
- -
- Assembly
- GCA_030142615.1
- Location
- JARQTG010000316.1:1519118-1522186[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.8 3.7e+02 1.8 0.1 1 19 381 399 381 404 0.75 2 14 1.4 93 3.7 0.2 9 23 439 453 432 453 0.92 3 14 0.0023 0.15 12.5 1.4 2 23 459 480 459 480 0.98 4 14 3e-05 0.002 18.4 1.8 1 23 486 508 486 508 0.99 5 14 0.00088 0.057 13.8 0.9 2 23 516 537 516 537 0.96 6 14 0.0011 0.07 13.6 0.2 3 23 544 564 543 564 0.98 7 14 0.0026 0.17 12.4 6.0 1 23 570 592 570 592 0.97 8 14 3e-07 2e-05 24.7 2.5 1 23 598 620 598 620 0.98 9 14 7.8e-06 0.00051 20.3 1.1 1 23 626 648 626 648 0.98 10 14 0.0008 0.052 14.0 0.6 1 23 658 680 658 680 0.98 11 14 2.7e-05 0.0017 18.6 0.6 1 23 687 709 687 709 0.97 12 14 0.0026 0.17 12.4 0.8 1 23 715 738 715 738 0.95 13 14 0.004 0.26 11.8 9.3 1 23 744 766 744 766 0.97 14 14 0.00035 0.023 15.1 4.1 1 23 772 794 772 794 0.97
Sequence Information
- Coding Sequence
- ATGGTTAACCGAAGATGTTCTGCCAAAACATGTTTCAACGAATCAATTTCAAGAcctgatttgaaatttttcacatttccaaAAGTGGAACATGAGGCTCGCATTTGGGCTAAAGCTTGTGATAGACCTGAACTTATGAACAAAAGTCTAGATGTACTACGCCGATATGTTCTTTGCGCTGAACACTTTGAGGATCGTTGGTTCATTAATCCACCACACAATACAGCATTTATTAAGACAGCACTTCCGATACCAAcgatatttcgaaataatatcAAAGAGATTTTAGTTCATCaacgaaaaaatttatcagtatCTAATCGTGATGCTGCTGCCACAAGTGATACAACGGAACAAACGGAAACTGACAATATGACTATGACGCAAAACTGGAGATTCAACACAGAAGCAGAATTCAATTCGCAATCGgaaGGCAATTCTAATGATAAAGAGCAGAGGACTTTGGATTTAGTCGTCAATACTACTGAAGTTACTAAGGAAGACAACACTCATAACTTCTGTAGACTGTGTGCATGTTTAATACCAGCGAGTTTACTGAGTTGTATTTATGATGCACATTTGGATCtaagaataaatagaatattacCAAACGAGGCTCATGTTTTCGAGCATGATGGATTGACTGATGAAGTATGCAAGTCttgcataaataaattgactGTCTGCAATGATACGATACAACAGTTTATAAATGCAAATCAAAAGTTGAGAGAGTTACATAAAAATCGAGAGGGGAAAAGTATTAATCAGTCATTATCATCAGAAAGTACTTCtcatacagaaaataatacagctCATCCCGAAGAGAATTTCCAAATCAATTCGAGCCAATACTTAGATATGAATTTGAATCATAAGTCTGATATCACCATTGCGGATATTAAAGAAGAGGATAGTGTTGATGTagaaaaggaattaaataatactgaaACATCTTgccaaaaaattaaaacagcaAGTTTAGACCCAAAGAAACTGTTATTGCCAAAGTCAGTATCATTGAATAACAGTAACGGCGAAGATACACTAGAAATTGCACAAATTACAAAGCCAAAAAGAAGTACGTTGTCGGAAGACCGATCAAATTCCAACAAAATCAAGTGTGCTGAAATCACAGTATTCAAATGTATGACATGTAATGAGGAATTCCTTGATAGAAATTCAGTAGTGGAGCATAGTATAGCAGTCCACGCAATTAAAGGTAAAAAACATGAGGTGAAATATACCGtgacaaagaaacaaattgaGAAGAGggaacaattaaaaaagtatcaCTGTACCACCAGTCCCTTGGAATTTACTGATTGCCGAGCTTATCGAGCTCACATGAAGTGGCATCCATCAGGGAACAATACATGCGAATACTGCGACAGATACTTCATATTACAAAACAGATTAGAATCTCACAGACGACGGCATTTCAATGAGAAACCATATCAGTGCAATATTTGCAACGAGTCATTCGTCTTCATTAATAGTCTTAAACGTCATAAAAAGTCTCACATGGAGGACGTGTCATTGCGCGAATGTAAAAGATGCAACAAGACGTTTCCCACGATAGCTCTTATGCAAAGACATACTAAAGCCCATCGCGAAAAGAGCGTCTTATGCAATTTATGCGGAAAACTTTTGTCCTCTCcacaaaatttacaatatcatCTAGCAACACATACCGAAGAACTACCATTTTCCTGTACGATTTGTTCTAAATCGTTCAAAACCACCAGCCAATTAAATTGTCACAATAAAACTCATCGAGTAGATCGCAGATTCGAATGCAATTTATGCGACAAGAAATTCCGCATGAAGTCGTTGCTTAAACAACACATGAATACGCATTTGGGTGAGAGACCTTATGTTTGTGAAATGTGCGGTGCTAGATTCAATAGATATGGAAATCTTACTAAACACAAAAAACAGCATGCGGTATCATCAGCATTAGAATCATCATACCCTTGTGATATTTGtcaaaagaatttgaaaacaGCATTTGCATACAAGTATCACATGGCGAAGCACAGTGGAGAGCGAAAGCCATACTCTTGTGATATTTGTGAGAAACGTTTTAAGCAAATTGCACAGTTGAGAGTTCACAATAGATTGCATACCGGTGAGCGACCTTATGCCTGCACTGAGTGTAGTCAACGATTTCGGACAAAAGCAACAATGGATCAGCATTATGTAACTTTACATACAGATAATTATCCACATGAATGTCCTTATTGCGATAAGCGTTTCAAACGGTTGCATTCTTTAAACTGTCATAAGAAAACTCATACTGGAGAACGTCCACATGTGTGTCGGATTTGTCATCATGCTTTTGCACAGAAGGGTGATATGTTGaaacatatgaaaatacataatcaGAGGTGCTTAGACAGTCATTTTCGACATACACATCATCAATCATCTATTAGTGATTTTCTTGAGGAATCAACTACCGACACGGAAGATTCAGAATGGATGACAGGAGTAGGTTGTAGTGAGGAGGATATAACGAATGATTATCTAATGACTGATGACGAATTGAGACCTGAATACGATTGA
- Protein Sequence
- MVNRRCSAKTCFNESISRPDLKFFTFPKVEHEARIWAKACDRPELMNKSLDVLRRYVLCAEHFEDRWFINPPHNTAFIKTALPIPTIFRNNIKEILVHQRKNLSVSNRDAAATSDTTEQTETDNMTMTQNWRFNTEAEFNSQSEGNSNDKEQRTLDLVVNTTEVTKEDNTHNFCRLCACLIPASLLSCIYDAHLDLRINRILPNEAHVFEHDGLTDEVCKSCINKLTVCNDTIQQFINANQKLRELHKNREGKSINQSLSSESTSHTENNTAHPEENFQINSSQYLDMNLNHKSDITIADIKEEDSVDVEKELNNTETSCQKIKTASLDPKKLLLPKSVSLNNSNGEDTLEIAQITKPKRSTLSEDRSNSNKIKCAEITVFKCMTCNEEFLDRNSVVEHSIAVHAIKGKKHEVKYTVTKKQIEKREQLKKYHCTTSPLEFTDCRAYRAHMKWHPSGNNTCEYCDRYFILQNRLESHRRRHFNEKPYQCNICNESFVFINSLKRHKKSHMEDVSLRECKRCNKTFPTIALMQRHTKAHREKSVLCNLCGKLLSSPQNLQYHLATHTEELPFSCTICSKSFKTTSQLNCHNKTHRVDRRFECNLCDKKFRMKSLLKQHMNTHLGERPYVCEMCGARFNRYGNLTKHKKQHAVSSALESSYPCDICQKNLKTAFAYKYHMAKHSGERKPYSCDICEKRFKQIAQLRVHNRLHTGERPYACTECSQRFRTKATMDQHYVTLHTDNYPHECPYCDKRFKRLHSLNCHKKTHTGERPHVCRICHHAFAQKGDMLKHMKIHNQRCLDSHFRHTHHQSSISDFLEESTTDTEDSEWMTGVGCSEEDITNDYLMTDDELRPEYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00291763;
- 90% Identity
- -
- 80% Identity
- -