Spar012049.2
Basic Information
- Insect
- Syrista parreyssii
- Gene Symbol
- -
- Assembly
- GCA_030142615.1
- Location
- JARQTG010000370.1:511165-515125[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.19 12 6.5 0.5 1 23 46 68 46 68 0.96 2 13 0.0036 0.23 11.9 2.7 1 23 106 129 106 129 0.98 3 13 1.9e-05 0.0012 19.1 0.5 3 23 137 157 135 157 0.97 4 13 0.00096 0.062 13.7 5.3 2 23 164 185 163 185 0.94 5 13 8.2e-07 5.3e-05 23.4 0.3 1 23 191 213 191 213 0.98 6 13 0.012 0.78 10.3 2.2 1 23 260 282 260 282 0.96 7 13 0.31 20 5.8 0.3 2 19 290 307 289 307 0.80 8 13 3.9e-07 2.5e-05 24.4 2.4 1 23 1010 1032 1010 1032 0.98 9 13 0.00012 0.0077 16.6 0.7 1 23 1039 1062 1039 1062 0.95 10 13 8.2e-05 0.0053 17.1 0.1 1 23 1070 1093 1070 1093 0.97 11 13 0.013 0.82 10.2 2.7 5 23 1102 1120 1099 1120 0.95 12 13 0.0022 0.14 12.6 4.1 1 23 1126 1148 1126 1148 0.98 13 13 2.3e-06 0.00015 22.0 1.2 1 23 1154 1176 1154 1176 0.98
Sequence Information
- Coding Sequence
- ATGCTTGCATTTCTACAGAACATAGAAGAAAACGATTCCAGATCTGAGATTTCTTCTCAAATATGTGATACATCTTTAAAAGCAACTGCAGATGTTGTACAAGATACTTGTCCGTTGGATGACAAACCCAAAGATTTTATATGCTCAGTTTGTGGTGATTGTTTTGCaggagaaaaacaattttttggacACTTGCAAGCACATGCAGGAGAAGTGCACTGGAAATGCACTCAATGTCCAGAGTCCAATGTTGGCTTTGATTCTCTTTCGAGACTTAGGATTCATGAGAATGCTTGTCATAATATAATTAGACCTTTCAAATGCAAGCATTGTGATTTACTTTTTGACCGAGCTTCCCAGCGAGATTATCACATGAGAAGTGTGCATTTTGGTGAAAAATCACAAATATGCCAGATTTGTGGGAAAGGATTTTTTCGTAGAAATGATTTACGTACCCATCTGAATATTCATTTAGGTACAAATCTTTGtatttgtgaaatttgtgGAAGGAAGTTCAATCATGTATCAAATCTCATTAGACACTGCAGAATTCATGCAGgaGTGAAACCATATCCATGCTCTATATGTGGCAAAAGATTCACACAAATTGGTTCTTTGGCAAGGCATAAAAGAATTCACACTCGagatcaaaataatattaaagctTGTTCATTCAGAAAGCAAGACAAGGCATCTTTTGATCTTAAAAATGAAGTTTCCAACAAACATGATCAACAAGGTGTGGAGTCAGGTCAGCATAAACCTAGTAAACGCCAGCACTATTGCAAAATTTGTGGAGAAAGTTTTCAATTCATATTGCTGTTACGACAACATGAAAAGCGTCACTTGCACAGTGTTGAAGATTTGGAATGTAAAAGTTGTGGAAAGACATTCCAGAAAGTAGAAGAAGTTAAGGAACATTGCTGTCGACCGCTTTCTTCATGTGATGTTAATGtcgcagaaaaaaatattaagaagctttcaaaatctattaaaaagaCAGATAATTTGAATGATACATCTGACGAATCTCACGGCGctgaaagtattttaatacaattacaGGATGAAACAATAGGAAATACTGACACTCCTAACATAtcaatgaatgaaattaaagaacaaACAGTCCAAGAACAACTTACGATTTACTCAGTATCAGATCAGGTCacgaatttaaattcaaaagaagctgaagaaataccgaatgaaatattgcaaGAACACTTGATGGAACTTGCcggtaaaataaatacaataagcATGGCACCAGATAGGGATGCCAGCATCAATATTTCCGAAATACTTGAAACGTACAACTGCGAAGATACAGAGATTGGAGCTGTAAATGATACAAAATCGAAACCGTATGAAACCCAAAATATTGGAGTACAAAGTGATAACAGTTTTCCAAGAGAAAAccacattatttatatacaaacattAGGCAAGGATGGGTTTGCAATTTTAACTGACCATGAAGGTGTAATGAGAAATGTCTCTTTTGACATAGTGCAagaagcaaataataaaaattgtcaacccAACATAGAAAATTGTCATTCTGATATGTCAGAAgtgcaaatttcaaaaactacTGAACCTCCATCGTTAACGACACAAGTGTCATACGTACTAAAAtcattcgatgaaaaatttatcaatcagGAGTTAAATTCAAATGGGCCATGTGCAATTGATTCGATTCCAAAACAGATGATGTCACAAGAGAAATTGGATTGTAATCTTTTAAATATAGAAACCACAGCAAAGACAGATCACTTCCACAatttaaaagagaaaaatcaatttaatatgGAAATTTGTGATTCAAATACTTTAAAAAACTGCCATTATTTGTCATCTTGTGATGACGACGCAGTATCGCAAACATTGTTCCCAAATACTGGCGCGATGGAGTCGTCAAAAAATGATGAACAAGTGCAGAactttgtcaattttgaaaatactgttTTAAATCGGGCTGAGCCAACGTTGCGTTTAGTCCAAACTGAAAATGGAGAACAGTTTTACGAGTTAATACTGAGTGATCTGACGGATAAAATACCAAACTCTACAGATATTCAAAGTTCACCAGAATCTAATAAAACCGATGGTACATCAACCTCTTGTgacatttccaaaaatatcgaaaCAATGAGCAACGATACCGTTAAACAACCTAGTTTACGTTTGGTACAAATGGAAAATGGACAGcagttttttgaaattgtgagAAACGATTCCTTGgaattagacaattttacaACGCCATTACACGAGCAAGAAACTTTACAAGCAAACAATATTGAGAAACTCAATGAAGTTAATATCAGTTTACAACCagagaatattattgaaacgaataatttaaaacataatcaaaataatcaatatttctttgcaaACGAAAGTCATGAAGGAAATGCAATAAATGCTTTGACAAATGATATAGTTACTGTTCAACATTCGAATTTAGAATTCATGAAGAGTGATGCGCAGTCTgagtttcaaaataattatcaaacaaACTTTGCTGACTTTGCAAAAACTCATTTTGACAATAGCACAGAACACTTTCTCGAGCTTGTACGAAACGTTGGCAATAGTCAAACAATAGCACCAGAAGAAACAGATCGACCTACGCCGATAGTGCGACTCATACAAAATGAAGATGGCGAACAATTTTTTGAGTTAATTCACGATTCTTTACAATTCGACAAAAATCGTCACGTAGAACTACAAAATGAGAAAGTGGATCAAAATTCTTCCGCAGATGTTCAAGACATAAACGCATTAAATAATCCAGACTGTAataaaccaaattttttaatttgcttcAGAAATAATTTAGAATTCCGACCAATAATGAATATGGATTCAAATTCAACAAAGGAACTTACTGGCGACGGTAATGTTAAATCAAacactataaattttttcatagattttaATCCAAACAATACTGCAGCTACAGGAAGTACCGTTCAAGACcgaaaacaaaaatccaaaCCCTCCGTTAAGAAGTTTCAGTGTTCTGAATGCAATAAGAGCTTTTCTAGTAGCTACAACTTTAAACAACATATTGGCACACACTTTACGGATCAACAAAAGTTTCAATGCAAAGAATGTGGAACTCAATTCGCATGGAAGTCAACATTGAACAAGCATATGGCATTGTATCATAGACCGGATGGGCCACAGAAATTTGTTTGTGAGATTTGCCCAAAAGTATATAACACTCTTTCTCAAGTAAATgaACATGTGAAGAGGGACCATTTAAAAGAACGCAAGCATGTCTGCTATTGtggtaaatcattttttaagaaGTTCGACCTAAAGACACATGGAAGAGCTCATACTAAGGAACGGCCTTACGTTTGTCGAGCATGTGGAAAAGGATTTCATCATCAAAGTCATATTATTCGACATGAACGTATACACTCTGGGGAAAGACCATATTCCTGTGATATCTGTCAAAAGACTTTTACACAGTTAGGTTCGCTGAAGGCGCATAAACAACGTCATCGTGAGACACAAATTGATTTATTAGATTATCGATTAGATGAAGATGATCCGTTAGCACTGAATGTGCTGTAG
- Protein Sequence
- MLAFLQNIEENDSRSEISSQICDTSLKATADVVQDTCPLDDKPKDFICSVCGDCFAGEKQFFGHLQAHAGEVHWKCTQCPESNVGFDSLSRLRIHENACHNIIRPFKCKHCDLLFDRASQRDYHMRSVHFGEKSQICQICGKGFFRRNDLRTHLNIHLGTNLCICEICGRKFNHVSNLIRHCRIHAGVKPYPCSICGKRFTQIGSLARHKRIHTRDQNNIKACSFRKQDKASFDLKNEVSNKHDQQGVESGQHKPSKRQHYCKICGESFQFILLLRQHEKRHLHSVEDLECKSCGKTFQKVEEVKEHCCRPLSSCDVNVAEKNIKKLSKSIKKTDNLNDTSDESHGAESILIQLQDETIGNTDTPNISMNEIKEQTVQEQLTIYSVSDQVTNLNSKEAEEIPNEILQEHLMELAGKINTISMAPDRDASINISEILETYNCEDTEIGAVNDTKSKPYETQNIGVQSDNSFPRENHIIYIQTLGKDGFAILTDHEGVMRNVSFDIVQEANNKNCQPNIENCHSDMSEVQISKTTEPPSLTTQVSYVLKSFDEKFINQELNSNGPCAIDSIPKQMMSQEKLDCNLLNIETTAKTDHFHNLKEKNQFNMEICDSNTLKNCHYLSSCDDDAVSQTLFPNTGAMESSKNDEQVQNFVNFENTVLNRAEPTLRLVQTENGEQFYELILSDLTDKIPNSTDIQSSPESNKTDGTSTSCDISKNIETMSNDTVKQPSLRLVQMENGQQFFEIVRNDSLELDNFTTPLHEQETLQANNIEKLNEVNISLQPENIIETNNLKHNQNNQYFFANESHEGNAINALTNDIVTVQHSNLEFMKSDAQSEFQNNYQTNFADFAKTHFDNSTEHFLELVRNVGNSQTIAPEETDRPTPIVRLIQNEDGEQFFELIHDSLQFDKNRHVELQNEKVDQNSSADVQDINALNNPDCNKPNFLICFRNNLEFRPIMNMDSNSTKELTGDGNVKSNTINFFIDFNPNNTAATGSTVQDRKQKSKPSVKKFQCSECNKSFSSSYNFKQHIGTHFTDQQKFQCKECGTQFAWKSTLNKHMALYHRPDGPQKFVCEICPKVYNTLSQVNEHVKRDHLKERKHVCYCGKSFFKKFDLKTHGRAHTKERPYVCRACGKGFHHQSHIIRHERIHSGERPYSCDICQKTFTQLGSLKAHKQRHRETQIDLLDYRLDEDDPLALNVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00293926;
- 90% Identity
- -
- 80% Identity
- -