Spar006883.1
Basic Information
- Insect
- Syrista parreyssii
- Gene Symbol
- -
- Assembly
- GCA_030142615.1
- Location
- JARQTG010000209.1:118644-120203[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00017 0.011 16.1 1.6 2 23 169 190 168 190 0.95 2 10 3.1e-07 2e-05 24.7 2.5 1 23 196 218 196 218 0.98 3 10 4.2e-05 0.0027 18.0 0.1 1 23 224 246 224 246 0.97 4 10 0.0011 0.07 13.6 3.2 3 23 254 275 253 275 0.95 5 10 0.0024 0.15 12.5 3.5 1 23 280 302 280 302 0.97 6 10 6.7e-06 0.00043 20.5 0.8 1 23 312 334 312 334 0.98 7 10 4.3e-05 0.0028 18.0 0.9 1 23 340 362 340 362 0.98 8 10 4.7e-06 0.0003 21.0 0.5 2 23 369 390 368 390 0.97 9 10 2.5e-05 0.0016 18.7 1.7 1 23 396 418 396 418 0.99 10 10 2.5e-05 0.0016 18.7 0.1 1 21 424 444 424 445 0.95
Sequence Information
- Coding Sequence
- ATGAGgttaATCATTGGCAAGAAGTCTTCAAGTCCCTTGGATCAAAGGAACGACGGAATACTACTGTCGGCAAGTTCCTCGGTCTCCGTGACTGGGACTAATAACCAGGGCAGTCCGAGTGCATGCGGAACCAAGAGCTTCTCTGTTCTCGCTTGCGCTGCAGGATCGAGTACGCCGACGCACGTCGAGAAGGATTCACGCACTGGAGAGGACGAGACCCGAGCACCTCGTCACTCGACTGAATCCCACCAGTCGTCTTACTACGCGACATCCGCTGGGGCTTTAAGGGATATAGACAGCGTTTTCTACCTGCCACAGCGAGAGCTCGTTGACGTTCAGGATGTCTATGGGCGCAATGAGGACTTGAAGATACCGGTTGACTTTTCGTCGGACGAGGCGCAAGCTTGTTTCGATGCGAGGCAGCCACTACAGGCTAACTTGGATGGCAGAGAAAGGGCCAAGGGCGTCGGGACCGATCGAGATCCAGATCCGGAAAAGAGGTTAAAGTGCGAACAGTGCGATCGCGTTTGCGTGAACAAGGAGCTCTTGCGAAAACATAAGGTTGTCCACAGCAAAGTCTTCCGGCACGAGTGCCAAATCTGCggaaagaaattcaaacggTCGACCGAGCTCAAGATCCATGGAAGGACGCACTCCTCCGAAAGAAATTTCGCGTGCGAGGTCTGCGGCAGTGCTTTCAAGCTGAAGTCTCAGTTGGTCGCCCACGCGAGGCGACACACGGCCGACTACAGGGTCTTCTGTAAGCTCTGCGGCAAGGGCTTCCACAATAACAGCGACTACCAGTCTCACAACAAGGTGAAGCACGTTGCCAAGGAACACGAGTGCTCCTCCTGCGGGAGGTCATACAGGGAAGCGTCCCTCCTTCGCTGCCATCAGAGAATCCACCAGCCGGATTACGTGCCGGACAAACGGTTTCAGTGCGAGATTTGCGGCAAGACCTTTGTCCTTCGCAAGTCCCTCGAAATGCACTTCAACAGTCACACGGGAGAGAAGAGATACAAGTGTGACGTATGTGGCAAAGGACTCTGCACGAGGTCCTCCCTTCTTGATCACGCGAAACTTCACACTGGACAGAAGCCGATCGTTTGTGATCTCTGCGGACGCGCCTTTACTAAGAGATCCACGATGATGGTGCACAGGAGGACTCACACCGGTGAACGACCGTATCGCTGCAACGTCTGTAATAACTCTTATACGCAGAGGACGAGCTTGGTTATTCATCAACGTTATCATTCCGGTGAACGGCCATATGTTTGCAAGCTTTGTTCGAAAGGATTCGTTTCCAGTGCGCAGCTCAGAGTTCACCAGAATTCTTGCCGATGA
- Protein Sequence
- MRLIIGKKSSSPLDQRNDGILLSASSSVSVTGTNNQGSPSACGTKSFSVLACAAGSSTPTHVEKDSRTGEDETRAPRHSTESHQSSYYATSAGALRDIDSVFYLPQRELVDVQDVYGRNEDLKIPVDFSSDEAQACFDARQPLQANLDGRERAKGVGTDRDPDPEKRLKCEQCDRVCVNKELLRKHKVVHSKVFRHECQICGKKFKRSTELKIHGRTHSSERNFACEVCGSAFKLKSQLVAHARRHTADYRVFCKLCGKGFHNNSDYQSHNKVKHVAKEHECSSCGRSYREASLLRCHQRIHQPDYVPDKRFQCEICGKTFVLRKSLEMHFNSHTGEKRYKCDVCGKGLCTRSSLLDHAKLHTGQKPIVCDLCGRAFTKRSTMMVHRRTHTGERPYRCNVCNNSYTQRTSLVIHQRYHSGERPYVCKLCSKGFVSSAQLRVHQNSCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01131004;
- 90% Identity
- -
- 80% Identity
- -