Spar006885.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Syrista parreyssii
Gene Symbol
-
Assembly
GCA_030142615.1
Location
JARQTG010000209.1:120988-122343[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 8e-05 0.0052 17.1 1.9 1 23 174 196 174 196 0.98
2 10 3.4e-05 0.0022 18.3 0.4 2 23 203 225 203 225 0.96
3 10 0.00039 0.025 15.0 3.9 1 23 231 253 231 253 0.96
4 10 0.023 1.5 9.4 0.4 1 23 257 279 257 279 0.97
5 10 1.7e-05 0.0011 19.3 0.6 2 23 286 307 285 307 0.97
6 10 1.4e-05 0.00091 19.5 0.2 1 23 313 335 313 335 0.98
7 10 0.077 5 7.7 0.9 1 23 341 363 341 363 0.97
8 10 2.7e-07 1.7e-05 24.9 0.2 2 23 370 391 369 391 0.97
9 10 4.5e-07 2.9e-05 24.2 0.6 1 23 397 419 397 419 0.98
10 10 2.9e-07 1.9e-05 24.8 1.8 1 23 425 447 425 447 0.99

Sequence Information

Coding Sequence
ATGATCTTGGACGTGAGAGATTCCTTGGCCGAAGGTTCTAGCTGTCATCCGGTTAGAGCGTTCGAGCGCACTGATCACTCCGTCCTTGCTTTCAGGTGCGCAGCGGACTTCCACGAAGCCCTGACCAAGGTTGAGCCCGATGAGGAGGTTCTCGAGGAGAACGAATTTGGCAACAACGTTATCGTCGTTGGCAGCATTAGTaacagcagtagcagcagcaacagcagcagcaacagcagcagcagcagcagcagcggcagTAGCAGCATCGGTGGcggcggcagcagcagcagcatatATCCTGTGGTCGTGGCCGGATTCAATAATATCGAGCGACAAGAGCAGCTGGAGGAGCAGGTTGCAATTCTTTCGGAAGCTCAGGAGGCCGAGGAGTACATTCTAGAAGCGGGGGAGATCAAATTGGAAGGAGGAGAAACGGGCGAGATAGAGAGACGCGATCGAAGGAGAATACGAGATAAATTTGCGGAAAGAAAGTCAATCTCTGGATGTCAGGGAAGCTACGAGTGCGACATATGCGGGAAGAAGGTTAAGAAGAAAATGCAGTTTCTCAAGCACAGACAAAATCACGAGAGAAAGAGCGGCGGGCGGTGCGCCGAGTGCGACAAGGTCTTTTCTGACGACGAGAAGCTGCAGAAGCACAGGATCAAGGTGCACCAGCAGGAACGACCGTTCCAGTGCATTCTTTGTGGCAAGTGCTTCAAGACCGAGGAATTTCTTAAGACTCACCTGAAGCAGCACAATAAGCGATTTACGTGCGACATATGCGGCATCTCGAAAGTGTCCGGTTATGATTTGCGGCTTCACAAGAAGAAGCACAATCAGGAGTATGTGATCTACTGCGAGACCTGCAACAAGGGCTTCTACACGAATCAGACACTCGAGCGACACGTGCTCACGCACACTGGGGAAAAACCGTTCGTTTGCAAGATTTGCAAGACGCCTTACGCGAGTGCAGCATACCTGAACATGCATATGAAATCTCACGGAGAGCGGGAGAAGCACAAGTGCAGCATATGCAACTTCGAAAGCTATTGGAAAGCTGCGTTGAAGGTCCATCTGAAGATTCACACCGGAGAGAATCAGATAACCTGCGAGATATGCGGGAAATCCGTATCGAGCAAGACGTATCTGCAGATTCACATGCGCATCCATTCGGGTGAAAAGCCTCACGTTTGCGAAGTATGTGGAAAGGCCTTTAGCGTCCGCAAGTACCTCATCGTCCATCTGAGGACACACACGGGGGAACGGCCCTACGAGTGTAAGCTCTGCCAAAAGAGATTCACGCAGCAGGGATCCCTTAATTCGCACATCAAGTCGCACAACGAGGGCAAATGA
Protein Sequence
MILDVRDSLAEGSSCHPVRAFERTDHSVLAFRCAADFHEALTKVEPDEEVLEENEFGNNVIVVGSISNSSSSSNSSSNSSSSSSSGSSSIGGGGSSSSIYPVVVAGFNNIERQEQLEEQVAILSEAQEAEEYILEAGEIKLEGGETGEIERRDRRRIRDKFAERKSISGCQGSYECDICGKKVKKKMQFLKHRQNHERKSGGRCAECDKVFSDDEKLQKHRIKVHQQERPFQCILCGKCFKTEEFLKTHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNQEYVIYCETCNKGFYTNQTLERHVLTHTGEKPFVCKICKTPYASAAYLNMHMKSHGEREKHKCSICNFESYWKAALKVHLKIHTGENQITCEICGKSVSSKTYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKLCQKRFTQQGSLNSHIKSHNEGK