Basic Information

Insect: Syrista parreyssii
Gene Symbol: -
Assembly: GCA_030142615.1
Location: JARQTG010000216.1:438125-440312[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.3e-05 0.0034 17.7 1.2 1 23 136 158 136 158 0.98

2 15 2.4e-07 1.5e-05 25.1 0.6 1 23 164 187 164 187 0.97

3 15 0.023 1.5 9.4 0.2 1 23 193 215 193 215 0.97

4 15 2.5e-05 0.0016 18.7 4.9 1 23 221 243 221 243 0.96

5 15 5.1e-06 0.00033 20.9 1.9 1 23 249 271 249 271 0.97

6 15 0.00021 0.013 15.8 6.5 1 23 277 299 277 299 0.99

7 15 0.024 1.6 9.3 0.0 2 23 340 362 339 362 0.94

8 15 3.3e-06 0.00021 21.5 5.4 1 23 440 462 440 462 0.98

9 15 0.0049 0.32 11.5 0.8 1 23 490 512 490 512 0.99

10 15 0.00028 0.018 15.4 4.5 2 23 519 541 518 541 0.94

11 15 0.0004 0.026 14.9 0.1 1 23 547 569 547 569 0.98

12 15 0.00037 0.024 15.0 2.2 1 23 575 597 575 597 0.97

13 15 1.3 87 3.8 12.6 1 23 603 625 603 625 0.98

14 15 4.5e-05 0.0029 17.9 0.2 1 23 631 653 631 653 0.98

15 15 0.00017 0.011 16.1 3.3 1 23 659 681 659 682 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.3e-05	0.0034	17.7	1.2	1	23	136	158	136	158	0.98
2	15	2.4e-07	1.5e-05	25.1	0.6	1	23	164	187	164	187	0.97
3	15	0.023	1.5	9.4	0.2	1	23	193	215	193	215	0.97
4	15	2.5e-05	0.0016	18.7	4.9	1	23	221	243	221	243	0.96
5	15	5.1e-06	0.00033	20.9	1.9	1	23	249	271	249	271	0.97
6	15	0.00021	0.013	15.8	6.5	1	23	277	299	277	299	0.99
7	15	0.024	1.6	9.3	0.0	2	23	340	362	339	362	0.94
8	15	3.3e-06	0.00021	21.5	5.4	1	23	440	462	440	462	0.98
9	15	0.0049	0.32	11.5	0.8	1	23	490	512	490	512	0.99
10	15	0.00028	0.018	15.4	4.5	2	23	519	541	518	541	0.94
11	15	0.0004	0.026	14.9	0.1	1	23	547	569	547	569	0.98
12	15	0.00037	0.024	15.0	2.2	1	23	575	597	575	597	0.97
13	15	1.3	87	3.8	12.6	1	23	603	625	603	625	0.98
14	15	4.5e-05	0.0029	17.9	0.2	1	23	631	653	631	653	0.98
15	15	0.00017	0.011	16.1	3.3	1	23	659	681	659	682	0.96

Sequence Information

Coding Sequence: ATGCCAAAGTGCGGGCTGAGAAAATTGCCTATTAAAGAAGGAACAAACAGATTAGAAGCTGCTAACTATGGCAATAAAATTATGGCGGTTAATGACAAGGAAAAATCTGCGAGGAAAcccaacaaaaataaaatcgtagaAGATAAAGCATCCATCGAAGAAACATTCAACAGATCAAATAATACTATCGATATTGAGCAAAAATCAAAGCTTCAGACTGAACTTAAGGAACAATCTTCGAAGAGTGAAGACAAAACTGATCTAGGAGTGGCAAAAGAGCATGAGATACAggataaaaaatctaaaaaaaagtgcaataaaACAGTTATTGCCCGCGTAAAACGAACGTCAGAACAACGCGCGGAATTGGCACGTTCTCAAATATCCGCAAACGGATCTACGCACTACAAGTGTCGCGAATGTGGAAAATTCCTGTCAACTGCCTATAACTTCTTGACGCATCTCACTGTGCATACAGGAGAACGACCATATACATGTCACGTATGTGGGAAAAGTTTCAGCGCTGCTTCCGGTTTAAATAGGCACGTTCGAAACGTTCACACTGGTGCAAAGAATTTTGCGTGCGATATATGCGACCGTAAACTTGCCACAAAAATTGCCAGAGACGAGCATCGTAGGACTCACACTGGAGAGCGTCCACATGTCTGTGAGACTTGTGGAAAGTCGTTCAAGCAAAAAGCCTCCCTTCACGTTCACAAGCGTTTTCACGCAAAAGATTTCACTCACTCGTGCTCGCTGTGTGACCGTGGCTTCCGAAGAAAACAGGAACTCAATAAACATATTCTCATTCACACTGGGCAGAAACCCTACACTTGCGATCTGTGCGGCAAACATTTTCGTAGCAAGGGCTGTATTAGTCGACATAAGCGTACTCACAGTAGTCAGAAGCTACATCGATGCTCTATTTGCGGGGCTGGGTTGCACGAAGAGGTGATCgccagagagaaagaggcgGATGACTTTCACGATGTGAAGATCGAGCAGGTGGAATATGTCGAGTGCGAACAGTGCGCGGCTATGTTCGTAGACATAAGTACCCTTGTAATTCATATGAACGCTGAGCATGGCCAGCCAGTACATTACTGTGAGTTATGTAAATTGGTCTATCGAGGAGATTTCGAAGACTTTCAGCAACACGTAATAAGCCACGATAACAGCTACACCAGGGTACGTTCGTTGAAGACGTTAGAGAAGAAACATGAGGAAGAATCgttcgaagaaaaaataaattcccagGCATATTTACTTCAGGAATATAATAACGAGATTTTGGATAACAACACAACAAGCAAGTCGTACGAGTGTGATATGTGCGGAAAGTGCTTTTCCCGGAAGCACTTACTCAAATACCACTTGAATGAACACGAAGATACCGAACAGGCTGACTTCCCCGATGAAATAGAATTACTGGAACGTGCTAAGCAGACAATTTATGAACGGGTttcatataaatgtaatacCTGCGAGAAAGTGATACTAACAAAAAGAGGATTTCTTCGGCACATTCGTATTCATCTGGGTAAACGACCCTGTAAGTGCGAGCATTGCGGCAAGTGTTACAGGATTGAGCAAGATTTGGCTAGACACATCAGAGACGTTCACGAAGGCTTGAAAAGATACGTCTGTGACATATGTAATCGGCCATTTGCAAATAAAGGGGCGCGAGATGATCATAGACGAATCCATACAGGAGAAAGACCGTTCGCCTGTGAACATTGCCCAAAAACATTTCGTACCTTAAATTCCATCTATATTCACAATCGTACGCACACTAATTATAAACCACACAAGTGCTCTCATTGCGACAAACATTTCCGTTGTAGACAAAGACTGAACAATCATTTAACCACGCATACTGGTGTCAAAGcattttcatgtgaaatatGTGGAAAACTCTTTTCTGTAAAGGGAGAAGTCATGCGACACCGCGCTACCCACAATCAGGATAAACCTTACGTTTGCACTAGTTGTGGATTGAAGTTTGGTCAGAAACGATATCTCAGAACTCACATTAAACAGCATCACAAGGACCAATCAGGTTTACTATTGGCAGAATTAACGGAGACGCGCAACTGA
Protein Sequence: MPKCGLRKLPIKEGTNRLEAANYGNKIMAVNDKEKSARKPNKNKIVEDKASIEETFNRSNNTIDIEQKSKLQTELKEQSSKSEDKTDLGVAKEHEIQDKKSKKKCNKTVIARVKRTSEQRAELARSQISANGSTHYKCRECGKFLSTAYNFLTHLTVHTGERPYTCHVCGKSFSAASGLNRHVRNVHTGAKNFACDICDRKLATKIARDEHRRTHTGERPHVCETCGKSFKQKASLHVHKRFHAKDFTHSCSLCDRGFRRKQELNKHILIHTGQKPYTCDLCGKHFRSKGCISRHKRTHSSQKLHRCSICGAGLHEEVIAREKEADDFHDVKIEQVEYVECEQCAAMFVDISTLVIHMNAEHGQPVHYCELCKLVYRGDFEDFQQHVISHDNSYTRVRSLKTLEKKHEEESFEEKINSQAYLLQEYNNEILDNNTTSKSYECDMCGKCFSRKHLLKYHLNEHEDTEQADFPDEIELLERAKQTIYERVSYKCNTCEKVILTKRGFLRHIRIHLGKRPCKCEHCGKCYRIEQDLARHIRDVHEGLKRYVCDICNRPFANKGARDDHRRIHTGERPFACEHCPKTFRTLNSIYIHNRTHTNYKPHKCSHCDKHFRCRQRLNNHLTTHTGVKAFSCEICGKLFSVKGEVMRHRATHNQDKPYVCTSCGLKFGQKRYLRTHIKQHHKDQSGLLLAELTETRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -