Spar010233.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Syrista parreyssii
Gene Symbol
ech-6
Assembly
GCA_030142615.1
Location
JARQTG010000309.1:700432-703810[-]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 7.8e-08 0.00011 22.0 0.7 4 44 16 57 15 57 0.95
2 3 6.6e-10 9.5e-07 28.7 1.7 3 44 81 120 79 120 0.94
3 3 0.068 97 3.0 0.6 10 24 158 170 150 188 0.62

Sequence Information

Coding Sequence
ATGAGCGATACGCCAAGAAAGGCTACAGTGAACAACGACTTTCCATGGACGTATTTCAAGATTCTGGACAGTGAATATGATTTAGTCCAGTgcaatttatgcaaaaaagaaatacttttgaCGGGCAATCATACGAATATCCTTATAGGACACATGTCCCACAATCACAGAAATCAAATCTCTGAGGCTCATAAAACCTTGGTGAATATGTCGAAAAATTCGAACCTCAAGCGATCGTTCGTCTGGCACTATTTTTATAGACTGGGCGATACAGCCAAGTGCAGAGTGTGCCAGTACGAAATTCGCAATAAAAACAGCAACACTTCATCTCTGATCAGACACCTGCTGCAGGTACATAAGATTAAGAGAGGCACGATGGTTAATGATTTAAAGGAATTACCAACAATGCCCAGACAATCATCAAACATGGGTAGTTGCATGCGCGAGCGTGTATTTCGTAGCTTTGAAGAGACCGCCAAAGGTATTTGGAAATGCAAACTTTGTTCATATGTTTCGGGAACAAAAAAACTCATGACAATGTTTTGTCACCTCAAAGTTGCTCATTGGAAAGCCAATGGCCCTGCGTACAGTGACTTCGTTATTGAAAGTAAACTCTATCCTAACGTTATGGTAAAGGAAGAAGATCACGTTGGCTCGACCGATCATGACGGTTCAACAGTGGTTTTAAGCTCATCTGAAAAATCACGAATGATTAACTCAGACGAACCTCTTGACAATACGGAAACTTATATCCTAGACGATGATCTTATCGCCCGACTCAGCGAATCCGGTTCTAATAATTCGAGTAAAACTACTGACATTAATCAGGATAATGTCGTTCAAACTGTTAATACCAATATGACTACTGGAAAGATCATTACTCAATCGGGCGCACAGGAGCAAAACTTAAGAATGTTTGAACCTTGTGTTGCAGGTGGTAACAATTATACagttaatatcaatttaatagataataaaaatcaaacaggATGTTTGGTATTTCgcaatgaagaaaatattgagcTTATTGATAAAGGTCAAACACAAGCTCAAAATTCTGTTACTCTTGATCATAATTATCACGATGAATCAAGAACTATGTCGCCAATTATTGCAATCGAAGATTCTGCATCTTTGGATACTCtgacaaaattatcaaaggcAAGAGATGAAAGGAATGAGGATTCTCATGATGGTATAGATATTCAAGTTCCTATAGATCACGAACGAAAATTTGATCATCAGTATTCGAGAAAATCTGGTGCAAGAGTGAGCTTTGCTcgtttatcaaaaatatcaaaaggaGCATCCAACGAcaattctattgaaaataagaTTATTAAAGGAAAGAATGATGCAGCTTGTGTGTCTTTGGATACTTCACAAGTTACATGTTCCTATGAAATATCTGATAACGAGGAGGACTTTAGAGGTTTCGAACTTCAAGTACCATTACAAAATGTACAGGATTTTAGCAGTGAAGTTAGAAGAGGAAATAATGGTCCACCATCGTATTACCAATatataaagattgaaaaagctggagaaaaacaaaatgttggTGTAATTACTTTGAACAGGCCAAAAGCCTTGAATGCAATTTGTGATAAATTAATGAGAGAGTTAGCTGATGCTGTGAAGAAGTTCGATAAAGATGCAAGTGTAGGATCTATAGTCATaacaggaaatgaaaaagcatTTGCTGCTGgaACAGATGTTAATGAGTTGGCGAATATAACATTTTCTCAAACTCTCAAGTCTGGTTTTATGAGTCACTGGGCgacaatttcaaaagtgaCCAAACCAGTGATAGCTGCTGTGAATGGTTACGCTCTTGGCGGAGGCTGCGAGTTAGCTATGATGTGTGATATTATATACGCGGGACACAAAGCTCGCTTTGGACAACCGGAAGTAATATTGGGATATTTCCCAAATCACGGGGGTACTCAAAGGTTAACGAGAATTCTCGGAAAAAGCAAAGCTATGGAAATGATTCTGACCGGTAGTCAGATAACGGCACAAGAGGGTGAAAAATTAGGGCTCGTTAGCAAAGTGTTTCCAGCAGATCGATTACTTGCCGAGGCAATCAAATTAGGCgagaaaatatcaataaattctcaaTTAATTATGGCAATGGCGAAAGAAGCAGTAAACGCagcGTATGAAACAACATTGCAAGAAGGattacaatttgaaaaaagactTTCATATGCAACGTTTGCTAcgacgGATCTCAAGGAAGGACTTAATGCTTTTATGGAGAAGCGGACACCCAAGTTcagtaatcaataa
Protein Sequence
MSDTPRKATVNNDFPWTYFKILDSEYDLVQCNLCKKEILLTGNHTNILIGHMSHNHRNQISEAHKTLVNMSKNSNLKRSFVWHYFYRLGDTAKCRVCQYEIRNKNSNTSSLIRHLLQVHKIKRGTMVNDLKELPTMPRQSSNMGSCMRERVFRSFEETAKGIWKCKLCSYVSGTKKLMTMFCHLKVAHWKANGPAYSDFVIESKLYPNVMVKEEDHVGSTDHDGSTVVLSSSEKSRMINSDEPLDNTETYILDDDLIARLSESGSNNSSKTTDINQDNVVQTVNTNMTTGKIITQSGAQEQNLRMFEPCVAGGNNYTVNINLIDNKNQTGCLVFRNEENIELIDKGQTQAQNSVTLDHNYHDESRTMSPIIAIEDSASLDTLTKLSKARDERNEDSHDGIDIQVPIDHERKFDHQYSRKSGARVSFARLSKISKGASNDNSIENKIIKGKNDAACVSLDTSQVTCSYEISDNEEDFRGFELQVPLQNVQDFSSEVRRGNNGPPSYYQYIKIEKAGEKQNVGVITLNRPKALNAICDKLMRELADAVKKFDKDASVGSIVITGNEKAFAAGTDVNELANITFSQTLKSGFMSHWATISKVTKPVIAAVNGYALGGGCELAMMCDIIYAGHKARFGQPEVILGYFPNHGGTQRLTRILGKSKAMEMILTGSQITAQEGEKLGLVSKVFPADRLLAEAIKLGEKISINSQLIMAMAKEAVNAAYETTLQEGLQFEKRLSYATFATTDLKEGLNAFMEKRTPKFSNQ