Spar005736.1
Basic Information
- Insect
- Syrista parreyssii
- Gene Symbol
- lola
- Assembly
- GCA_030142615.1
- Location
- JARQTG010000188.1:1090608-1094016[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5 4.9e+03 -2.7 0.1 4 21 102 119 101 121 0.77 2 2 5.1e-09 7.3e-06 25.5 0.1 9 40 422 454 421 459 0.87
Sequence Information
- Coding Sequence
- ATGGAGGACGATCAGCAGTTCTGCTTAAGGTGGAACAACCATCAGAGTACGCTTGTCCAGAACTTCGATACCCTCTTAGAGAGTGGCACGTTGGTTGACTGCACCTTGGCGGCGGAGGGGAAGTCTTTAAAGGCCCACAAAGTGGTCCTCTCCGCGTGCAGTCCATTCTTTGAGGGCCTCCTCAGCGAACACTATGACAAGCATCCCGTGTTTATACTCAAGGATATTAAGTTCAAAGAACTCAAAGCCATGATGGACTACATGTATAAGGGAGAAGTAAATATCTCTCAAGACCAATTGGCAGCGCTCCTCAAAGCCGCCGAGTCCCTGCAAATCAAGGGTCTCTCGGAATGTAAAACGAGCGGCAACAgcggcggtggcggtggcgggGGTGGTTGTGGCGGTAGGAGCGAACCCAGACCACCAAAAGTCGTCTCACAGCCAACGGCGCCGTCGTTGGACATTCCCCACCCGTCTTCCGGTCTCACCATAGAAAAGAACAGCAAAGTTCCTAGGCAGAGTTTGACACAGGTCTCCGTCGGTGATCTGCCAGAAGACTCCGCCAGTCCCCAGCTCCCCAGAGGGCTCTCCTCCAGgGAAGGCTCGCAAAGTCCGACCAAtgcgaggaaaaagaaaagatttcgcGGTAGGAGCGTAGGCGACGACAATTCCGTTGAAAACCACGAGGCATCGAACTCGAGTGACATGCCCCAGCAAATGGGGGTTTCGGCACTCGCGATCGCGCCTGTCGCCAACGAAAAGTCACACGCCGACCCCACAGACTCTCTCGGTAGTTCAGTGCTAATGCAACAGCTGGCCAAACCTGCCGACGAGATGCTCCAGATGCCGCTGGAGAATCAACAGCCTAATGATAATTTGATAGAACCAAAGTCCGAGTACCTTGAGGATCCGGAGGAGAGTGTTGAGGATCTGACCCTCGATGACGACATGAACGATTTAAATGAGATGGAACAGGATACCAACAGAGCTGGCCCTTCCCACGAATCCTCCCAGCACCCTGGTGGGGGGGCGGGAGCGCGGGCTCGGTCAAGCGGGAATTTGAGTTACGGTGAAGGTGGTGACGGTGAGGGTATTAGCGCCTGCGATGGTGCTGAAGGTGCCCTATGGGCCTCACATTTCCTCGAATGTAAAAAGGGACCAAACACGAGGCGACCGCGACCGGACGTTGACGTAGGCGCGTTGCTCAAGTCCCTGGCCAATAAGCAGGGTAGAAAATATAGCTTAGACTCGGTTAAGATGTCCCTGGAGGCGATTTTGCAGCAGGGCGTTAGCACCACTCAGGCCTCTGAAATGTACGGCATTAATCGCTCGACTCTGCAgttctatttgaaaaaattgaacgtTGTAAGAAGACGATGGAGACAACCTAGCAACTGGATGCAGCCTAGTCAGTCTTCGACTTGA
- Protein Sequence
- MEDDQQFCLRWNNHQSTLVQNFDTLLESGTLVDCTLAAEGKSLKAHKVVLSACSPFFEGLLSEHYDKHPVFILKDIKFKELKAMMDYMYKGEVNISQDQLAALLKAAESLQIKGLSECKTSGNSGGGGGGGGCGGRSEPRPPKVVSQPTAPSLDIPHPSSGLTIEKNSKVPRQSLTQVSVGDLPEDSASPQLPRGLSSREGSQSPTNARKKKRFRGRSVGDDNSVENHEASNSSDMPQQMGVSALAIAPVANEKSHADPTDSLGSSVLMQQLAKPADEMLQMPLENQQPNDNLIEPKSEYLEDPEESVEDLTLDDDMNDLNEMEQDTNRAGPSHESSQHPGGGAGARARSSGNLSYGEGGDGEGISACDGAEGALWASHFLECKKGPNTRRPRPDVDVGALLKSLANKQGRKYSLDSVKMSLEAILQQGVSTTQASEMYGINRSTLQFYLKKLNVVRRRWRQPSNWMQPSQSST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00294592;
- 90% Identity
- iTF_00293065;
- 80% Identity
- iTF_01395213;