Spar005732.1
Basic Information
- Insect
- Syrista parreyssii
- Gene Symbol
- -
- Assembly
- GCA_030142615.1
- Location
- JARQTG010000188.1:1062994-1066708[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.9e-13 9.9e-10 37.9 0.0 1 39 284 323 284 327 0.90 2 4 2.1e-12 3e-09 36.4 0.1 2 39 339 376 338 379 0.94 3 4 7.7e-19 1.1e-15 57.0 0.0 2 45 394 438 393 438 0.97 4 4 8.8e-19 1.3e-15 56.8 0.1 1 42 445 487 445 488 0.97
Sequence Information
- Coding Sequence
- ATGTCTCGTGTGAAGCCCATAGCTCGTCTCGAGAAGCTCGTCAGGCATAGAAAGAGACTGTCCCTGCTGAAGACAGCCGATCAGCTGAAGATCAAGGGCCTCTGCGAAGTGCCAGAGACCAAGGACGGTCCACCGTCGGTCAGTCTCAGCTCGCCCGGTAGAGACGCAGGCACACCGCGGCTCAACTACACCAAACTGAAGAGGCATCATCCCAGGTACAAGAGACCCAGGTTCGAGCCCCGAACCGACTCCAGGCATTACGAAAAGTATAAAGAGGAAGAGGCCACCGAGGCCTTTGGTCGTGACGACAAGGAGAATCACAGAGGCTGGCAGACCGAGGATGAAGAGTGCGCAGAGGCCGCAGTAGTCTTGGAGTCCTGCCAACGTGACAACAACAACGGTAACAGtacaaataacaataacgGTGACATGTTTTGTCACACAGGGTTAGGTCACTACGGTCATCATCCGGACCCGGGAGAGGTCGATCTACCCCCTGAGACTCAGCCCACACCCCCCAGCGCTACTTTAGTTGGCACCACGATCACCCACCTGAGAGATCCCGATCATCACTCGACAGATATCCAGAATTGCGACAGTGTCAAGATCAAGTTCGAGACTTTGCACACGATGGATTCCTCGGATACGATCGATATCGATAGCCACATGTCGGACAGGGCGAGTGTGAGTTCGAAGAACGCTGTGGATAACGATAATATGATGATGATCACGCCAGAATTATTGGGCCTCATGCCATCGGGAAGTTCGGTACATTCGGATTCCGGTGAGGCTAATGCGAGAGGACATTCGGGCCAGTCTGGCTCGCATCATCATGGTTCCAAGTCTTGGACGCAGGAGGACATGGACGCGGCCTTGGAGGCTCTTAGGAATCACGATATGAGTCTTACAAAAGCATCAGCAACTTTCGGTATACCATCGACGACCTTGTGGCAGCGTGCTCATCGTCTTGGCATCGACACTCCAAAAAAGGACGGACCCACCAAATCCTGGAGCGACGAGAGTCTGAACAACGCGCTGGAGGCACTTAGGACCGGTACCATCTCGGCTAACAAGGCTTCAAAGGCCTTTGGCATTCCCTCGAGCACCCTGTACAAAATTGCTAGGAGAGAGGGTATCAGATTAGCTGCTCCCTTCAACGCGAGCCCCACTACTTGGTCTCCTGCCGACCTGGACAGAGCCCTTGAGGCAATAAGGTCCGGTCAAACGTCGGTGCAAAGAGCTTCGACCGAGTTTGGAATTCCTACAGGAACTCTTTATGGGAGATGCAAGAGGGAAGGTATCGAGCTCAGCAGAAGTAATCCGACGCCTTGGAGCGAAGACGCCATGACGGAGGCTCTGGAAGCCGTACGATTGGGTCACATGAGCATCAACCAAGCAGCCATTCACTATAATTTACCATATTCCTCCCTTTATGGACGATTCAAAAGAGGGAAGTACGAAGAACCTGTTGTTAGTGAAATGTCGCAAGATGGCGGTAGCCCTCACTATCATCAGAGTCCTAATCAGAATCACTCCACCTCTCTGCCAGATCAAATGCCTTATCAGGGCAGCTGA
- Protein Sequence
- MSRVKPIARLEKLVRHRKRLSLLKTADQLKIKGLCEVPETKDGPPSVSLSSPGRDAGTPRLNYTKLKRHHPRYKRPRFEPRTDSRHYEKYKEEEATEAFGRDDKENHRGWQTEDEECAEAAVVLESCQRDNNNGNSTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAVDNDNMMMITPELLGLMPSGSSVHSDSGEANARGHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVSEMSQDGGSPHYHQSPNQNHSTSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00292363;
- 90% Identity
- iTF_00292363;
- 80% Identity
- -