Sumb011556.1
Basic Information
- Insect
- Synergus umbraculus
- Gene Symbol
- -
- Assembly
- GCA_900474325.1
- Location
- UCOK01015361.1:13305-21052[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0056 0.64 11.1 0.9 1 21 59 79 59 80 0.97 2 13 0.00026 0.029 15.3 1.9 2 20 90 108 89 110 0.93 3 13 0.025 2.8 9.1 1.2 1 20 149 168 149 170 0.94 4 13 0.00042 0.048 14.7 2.6 1 23 178 201 178 201 0.97 5 13 0.28 32 5.8 0.2 1 21 250 270 250 271 0.93 6 13 0.62 71 4.7 0.1 1 13 278 290 278 292 0.86 7 13 0.11 13 7.1 0.2 1 11 342 352 342 358 0.86 8 13 0.00057 0.066 14.2 0.1 1 21 388 408 388 409 0.96 9 13 7.3e-05 0.0084 17.1 0.5 1 20 417 436 417 438 0.94 10 13 0.00032 0.037 15.0 0.4 1 22 565 586 565 586 0.96 11 13 0.00021 0.024 15.6 4.4 1 23 595 618 595 618 0.95 12 13 0.00034 0.039 14.9 1.3 2 21 731 750 731 751 0.95 13 13 8.1e-05 0.0093 16.9 9.3 1 23 759 781 759 782 0.96
Sequence Information
- Coding Sequence
- ATGTTAGCAGATGAAGCAGCGAATGTTGAGTGGAACGAGCAATGGAACGAGGTGAAGTACATTATTCCAAATGAATCGAGACACGATTTTGGTATGAATCCCTATCTTGTGGAAAGACACAAAGTATGGATTAATAGCtgtgaaaatgaaattcctgTAAAGAAGAAACTCCCTTTTAAATGCGAAATCTGCCAACAACTTTTTGCATGGGCACGTAATTTGAAAAGACATCAACGTCACTGTGGAAATGATAAAGAAGGACCACTAAAGTGTAACCTTTGCGACAAAACCTTCTTCAGAAACGACAAACTTAAGGatcattattttaaagGTTGGGATGAAGGCGAATGGAATGAAAACATGATCAAATACGAATCACCGCCAGTAGACGAATCTGGATTTGAACAAAGTGTGGAAGAAATTGACAACGAAGCCCAAGGCACCTTTAGATGTTCCCGCTGTGGACGAGTTTATAAATGGATGAAGGATTTAAAACGTCATCGACATGGCTGTGGTGATCAAAAACCAAAATTTTCTTGTCGAATCTGTAAAAACGTATTTTCTCGTGGAGATACTCTCACGCGTCATTATAAACGCAAACACAATAAAATTCCTCTCACTCAAATTCGCGAAAAGAAATGCAgATGGACAGAAGATTCATGGAGACATCTCAGGATAAAGGAAGAAGTTCTTCCTTGGGCTGGATTCGTTTTGGGAGCTGAGGAAATTGACAAGGAACAAGTTAGTTATGAATGTTCACGAtgtggaaataaatataagtggATAAAGGGCTTACAACGCCATCAAATGGTATGTGGAAATAATACAAGATTTCTGTGCTCTGTTTGCAATACTATGTTTACCCGTGAAGCAGCGAATGTTGAGTGGAACGAGCAATGGAATGAGATGAAGTACATGATTCCAAATGAATCGAGACACGATTTGGATTTAGGTCTTATGGAAGGACACAAAGTATGGATTAATAGCcgtgaaaatgaaattcctgTAAAGAAGAAACTCCCTTTTAAATGCGAAATCTGCCAACGAATGTTTTCATGGGCatATACCCTTACTCTAGATGAAGTTACTGGCTTTGAATGGTATCCACAGGAAATTTTGTCTCGAACTCGGAGACAAGGCACTTCACAAGATCAACAACAATACATGTGTGGAGAATGTGGCAAAGGTTATAAATGGATGGATAATTTAAGAAGACATCAGAGACTAGAATGCAACAAAAAACCAAAGTATTCATGTGTTATGtgtgacaaaattttttacagacgttacgaattgaaaaatcacACTATCTCACAGTATGAAGGACTTAATACGTCTTTTCAATTTGTTCACACATCACCTGCGCCAATTGGCAGaccaaaaaatacaaaagctTGGAAGATTTTGCCAAAACCGGCTAGTTCGATTGGATTAACAACTCTTACTGTACCATCACCATCTGGAGAACAAAAGAAAGTAGCTCTAATGCCTGTGCCAAATAGTTCTGATGATGCTGACGAATATACAGCTTTGTGgatgtcaaaaaaaaatactcaaaatctGGAGATGAAGACCCCACAATATGGACCAAATCTAAGGAAATCTTATAAGTGGAAATTGTCTAGTCTTGGATCGAGATCATCTACAGCTCAACCAGATAGCGGAGAATTTGTCCGTGTACAATTGCCAGAATATGTGTGTCCTAAGTGTAGTAAAAGGTATAAATGGTTAGACAGCTTAAGAAGGCATCAGAGAGTCGAATGTGGTAATAAAGCAAAAAAGTTTTCCTGTCACATGTGCGACAGGAAGTTTAAATATCGATACGAAATGCGAAATCATATATCGTTGCAACACGgTCCAAAATTATCTTCAGGTGGATTGATTGACCAGTACTATCAATATCAGTCCATGTACCTTAGTCTGGTAGCTAAAAGTAAGTGGAATGAAGCGCTCAATTCTGCTGTGATCGAAAACAAAATCACGAAAAACGTTGAAGAGATCCATCAACCGAAAAAAAAGGATGTAATTCTTGATCCTCAGCCTAAAGAAGATTCCACGTCTGAAAATTCTGCAAATTTCAAGGATAATTCCGTACAAgataagaagaaaagaaacaatGAGAAAAATCGTGAATCAAAACTCACAAATTCGAGttcaaaaaattatggaattttgaacttgaATGAAAATTCGTGTCCACGATGTGGAAATACATACACGAGAACGCATTCTCTAAATAGACACATTCGTTTTGAATGCGGGATTGAGCCAAAATTCGTTTGTCCCTTGTGTCACAAAAAATCAAAGCACAAACATAATTTGTTGATTCATATGCGAACACATCATAAGgattga
- Protein Sequence
- MLADEAANVEWNEQWNEVKYIIPNESRHDFGMNPYLVERHKVWINSCENEIPVKKKLPFKCEICQQLFAWARNLKRHQRHCGNDKEGPLKCNLCDKTFFRNDKLKDHYFKGWDEGEWNENMIKYESPPVDESGFEQSVEEIDNEAQGTFRCSRCGRVYKWMKDLKRHRHGCGDQKPKFSCRICKNVFSRGDTLTRHYKRKHNKIPLTQIREKKCRWTEDSWRHLRIKEEVLPWAGFVLGAEEIDKEQVSYECSRCGNKYKWIKGLQRHQMVCGNNTRFLCSVCNTMFTREAANVEWNEQWNEMKYMIPNESRHDLDLGLMEGHKVWINSRENEIPVKKKLPFKCEICQRMFSWAYTLTLDEVTGFEWYPQEILSRTRRQGTSQDQQQYMCGECGKGYKWMDNLRRHQRLECNKKPKYSCVMCDKIFYRRYELKNHTISQYEGLNTSFQFVHTSPAPIGRPKNTKAWKILPKPASSIGLTTLTVPSPSGEQKKVALMPVPNSSDDADEYTALWMSKKNTQNLEMKTPQYGPNLRKSYKWKLSSLGSRSSTAQPDSGEFVRVQLPEYVCPKCSKRYKWLDSLRRHQRVECGNKAKKFSCHMCDRKFKYRYEMRNHISLQHGPKLSSGGLIDQYYQYQSMYLSLVAKSKWNEALNSAVIENKITKNVEEIHQPKKKDVILDPQPKEDSTSENSANFKDNSVQDKKKRNNEKNRESKLTNSSSKNYGILNLNENSCPRCGNTYTRTHSLNRHIRFECGIEPKFVCPLCHKKSKHKHNLLIHMRTHHKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -