Sumb006387.1
Basic Information
- Insect
- Synergus umbraculus
- Gene Symbol
- -
- Assembly
- GCA_900474325.1
- Location
- UCOK01008717.1:55116-59572[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.19 22 6.3 0.1 6 21 256 271 253 272 0.90 2 13 0.0051 0.59 11.2 0.5 1 19 278 296 278 301 0.95 3 13 0.00012 0.013 16.4 3.7 2 23 314 336 313 336 0.96 4 13 0.13 14 6.9 0.5 3 23 349 369 349 369 0.94 5 13 1.3e-07 1.5e-05 25.7 1.0 3 23 408 428 406 428 0.97 6 13 0.029 3.4 8.9 1.3 1 23 433 456 433 456 0.94 7 13 9.4 1.1e+03 1.0 0.1 2 23 526 547 525 547 0.92 8 13 6.3e-05 0.0073 17.2 1.6 1 23 556 578 556 578 0.97 9 13 1.7e-05 0.0019 19.1 0.5 1 23 586 608 586 608 0.97 10 13 0.063 7.3 7.8 4.8 1 22 614 635 614 635 0.95 11 13 2.2e-05 0.0025 18.7 2.5 1 23 663 685 663 685 0.99 12 13 0.1 12 7.1 0.0 1 23 750 773 750 773 0.97 13 13 1.7e-06 0.00019 22.2 4.7 1 23 778 801 778 801 0.96
Sequence Information
- Coding Sequence
- atggCCACTATAAATACTTGGGAAAATGTATGTAGACTTTGTTCTGAAGAGAAGACTGAAATGCTACCGATATTTGGCAATGAAGGCATTCAACGCAAAGTGGCACAAAAACTCCGAGCTTGTTTACCTGTTCTTGTTTACAAGACCGATCCTTTACCCAAACAAATTTGTCAATTCTGTGCCGCCAGACTTGATGATGCCTACGAATTTCGAGAATATTGTTTAAGTGTTTACAAAGCAATGCACGCCAAACTCTTAATGCTCAAGGATTTGGAAGCTGTGAATATTTTCCTAGATGCTATGCAGAATTCACCGGATCCTTGTCAAGTACAGCtctgtaaagaaaaatgtagagCTCCTCCTCCTCTAGTTCCATTACCTGCAACACTGCCAATAGAAAGTACGACATCTTTAGTCAATATATCTGAGATAGCACAGTCTAATCAATCAAGGGATCCTCTGCCAGAACTTCCGTGCGAAGTTCAAATCAAAGAGGAACCGTCAGAGACAATACTTAGAACTGATTCTGATATAGATACTTCAgataatagaattttaggaaGTTTAGGTCTAGAAAGAGTAAATGATGTTCTTGCAAATGAGCGcaaaaaatcttatgaaaagaATGGAGAATCAATTCTTTATAAAGCAGAGAAGCCACGAACCAGTATATTGGAACAAGTACTCAAGGGTAATATAACTTTAAACGACCGTCAAGAAGTGAAAAGCAAATTTGGACTGAGTTCTAAGTGGTGGTGTGCTCcttgtaataattattacagaACAAAAGAAAGTCTGATAAAACACATGCAAGTGATTTGTCCACGAAGATACACTTGTAGAAAGTGTTCTCGTGTTTTTTATACTGTGGAGGATTTAGCAAAACACGACGGAACGGATCACCTGAAAATCACATTGGATTTTGATGAATCAGTTACTAAGTGTCACCAATGTGATCGTGAGTTCGTTAGCTGGGAAATGCTGAGGCATCACAGACTTCGTGACCACGTTGCAGAGGATATTGAAATTGGGACGAGTACTTGGTGTCCGCCTTGTAACAgATTCTTCCCCAATATGGAATCGTACCAAAATCATAAACAACTCCATCAATTGGATACAATGACTAAATTGCCAATTAGTTCATTACCTTCTGTTTCTCAAGCTGAAGTAactaaagaatttagaaaagaaaaccACAACGAAGGCACAAAGTCTTTAGCTTGTCCTACGTGTGGcaagGTTTGTACACAACAAAGCGCGTTATCGAATCACATGCGAACTCACGAGCCAAAGAAACACAAATGCGAAATTTGCGGACGATTTTTCGGTCTTTTTATAAGACTCGCAACGCACAAGATGACTGAACACAATCAAGCAATGACGCCAGTCATGACTAGTGTCGAACAAGAAGAAGCTTTAAATGCTGAAAGGGAAGCGCGAGAAGCAAGAGAAGCTAGAACACGAGGCAAAACCAGATCTTATAAGGAGaTGATGGAAGGAAACGATTGTCCAATAAATGATAGGCCAAGGAAGCGAAgcgcttttttaaattcaaactcGTCAAAAAATGCTGTACGTTGTGGTATTTGTTTGCAGTGGTTTAACAGTCGCACAGAAATGATTCCTCACTTACAAACGCACTCAGAGTCTTACTTAACTGAAAGCTTTCGTTGTCGTGTGTgtacaaaaacttttaaagaaaGGTGGCAATTAACTAGGCATGAAGCTTCTCATGAACGCACGAGTATTACGACTTACACTTGTTCAGTTTGTAATGAAGTGTTTACGGACAAACCCTCTTACAAGGCTCATCAAGGGAAGCACGCAGTTGATAAAACGTATCACTGTGCGAAATGCAATAAGATTTTCTTTAAGGAATTCTCTTTGATGACGCATCAGTGTACTGGGAAACCCATATTTAGTAAGAAAAAAGCTATTCCAAAGACTTTAGAAAGGAGTCAATCTTTGTTAACCGGCTCTAAGAAATACAAGTGTTCCAAGTGTAATGCAACTTTTACCAATTCACAATCGAGAAATTCACATATGAGAGTTCATACTGAAGCACATGCTATGATGCAAGTTAAaaaacaagaattaaaaaaagaactagGAGTAGAGGTGATGCCAAAGCTTAGACCTGAAACTTCACCTGGTACGTCTATGTCTCGTATTGAACCAAAAGTAGAATCTGTTGAATCGAGTCCGTCAACACCAGTTAAACGAACATTAATTAGAACAGCTGGAGGTTATCGCTGTGGCGTATGTCAATCACCATTTGTGCTTCGAGATTTAGCCGTGGCGCATCTTCGGTCTGCTCATCCAGTAATGCCATACCAGTGTCCTTATTGTAAAAAACGTTTTACGACGCAGTACACGTTCACACATCACATAAAAGCTGATCATCCTGATGAGTCAGAGAATTGA
- Protein Sequence
- MATINTWENVCRLCSEEKTEMLPIFGNEGIQRKVAQKLRACLPVLVYKTDPLPKQICQFCAARLDDAYEFREYCLSVYKAMHAKLLMLKDLEAVNIFLDAMQNSPDPCQVQLCKEKCRAPPPLVPLPATLPIESTTSLVNISEIAQSNQSRDPLPELPCEVQIKEEPSETILRTDSDIDTSDNRILGSLGLERVNDVLANERKKSYEKNGESILYKAEKPRTSILEQVLKGNITLNDRQEVKSKFGLSSKWWCAPCNNYYRTKESLIKHMQVICPRRYTCRKCSRVFYTVEDLAKHDGTDHLKITLDFDESVTKCHQCDREFVSWEMLRHHRLRDHVAEDIEIGTSTWCPPCNRFFPNMESYQNHKQLHQLDTMTKLPISSLPSVSQAEVTKEFRKENHNEGTKSLACPTCGKVCTQQSALSNHMRTHEPKKHKCEICGRFFGLFIRLATHKMTEHNQAMTPVMTSVEQEEALNAEREAREAREARTRGKTRSYKEMMEGNDCPINDRPRKRSAFLNSNSSKNAVRCGICLQWFNSRTEMIPHLQTHSESYLTESFRCRVCTKTFKERWQLTRHEASHERTSITTYTCSVCNEVFTDKPSYKAHQGKHAVDKTYHCAKCNKIFFKEFSLMTHQCTGKPIFSKKKAIPKTLERSQSLLTGSKKYKCSKCNATFTNSQSRNSHMRVHTEAHAMMQVKKQELKKELGVEVMPKLRPETSPGTSMSRIEPKVESVESSPSTPVKRTLIRTAGGYRCGVCQSPFVLRDLAVAHLRSAHPVMPYQCPYCKKRFTTQYTFTHHIKADHPDESEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00880695;
- 90% Identity
- iTF_01391429;
- 80% Identity
- -