Sumb019295.1
Basic Information
- Insect
- Synergus umbraculus
- Gene Symbol
- -
- Assembly
- GCA_900474325.1
- Location
- UCOK01018598.1:261196-264081[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8e-05 0.0092 16.9 0.5 2 23 58 79 57 79 0.96 2 10 0.11 12 7.1 0.3 1 12 91 102 91 106 0.90 3 10 0.00014 0.016 16.1 3.2 1 23 119 141 119 141 0.97 4 10 0.00017 0.02 15.9 1.0 1 23 147 169 147 169 0.97 5 10 6.1e-05 0.007 17.3 0.6 1 23 175 197 175 197 0.97 6 10 3.6e-05 0.0041 18.0 7.1 1 23 208 230 208 230 0.97 7 10 2.8e-07 3.2e-05 24.7 1.6 1 23 239 261 239 261 0.99 8 10 8.5e-06 0.00097 20.0 1.7 1 23 267 289 267 289 0.98 9 10 5.1e-06 0.00058 20.7 5.3 1 23 295 317 295 317 0.98 10 10 2.4e-06 0.00027 21.7 3.7 1 23 323 345 323 345 0.98
Sequence Information
- Coding Sequence
- ATGAGATACTTTGTATCAAAGCTCGACGTGCTGCCACCGCAAAATCATCAGTGTTGCGATGGCAGTAATATCAAAGTATATTCGACTGATGCTTCTGGAATACTCATCTCTGATCAACTCGAGAAAACGGATACTAATGGGAGCGAAATTCTCGTCGCAGATGGCATTCTTCATTGCAACTTGTGCGGAATTGGATTCGTTTCCGAACAAGAGCTCACCATGCATCTCAAGACTCACGAGGAACAGGAAGCAATTGAAAAGGAGGACCCTTTCGACTGTGAACAGTGTGATCGAGTCTTTAACACTACTACTGTTGTCAGAAAAGACCAACAACTGCATAGTGATGATAAAGTTCATATCTGTGAGACCTGTGGCTATAGCAGTGCTCATCGACAGAATCTCGTTAGTCATCAAAGACGGCACAATTTCGAGTACAAATTCCACTGTGAGATATGCGGCGCGGGTTTCTATACCCGGAATACTTATCAGGAACATCAACTCGTCCACTCGAGAGAAAAGCCTTTTCAATGTGATATTTGCAATGCCACATTTCGATACCGACAGGGTCTAAGATTGCATGCGAAGCTTCATCTGCCAGATTACGTGCCACCTCAAAAGAAGCATCATTGTGAGCTTTGCCATAAAAGCTTCTCTAGGAAGCAGGTGTTGCTTGTACACATGCGTACTCATGGCAACGTTGGTCCACAGAATGAATACGTTTGTCATATTTGTGGAAAATCAGTTTCCAGCAAGACCTATCTTACAGTTCACGTTAGGAAGCATACCGGTGAAAAACCACATGTCTGTGACCTTTGCCAGAAGGCTTTCATATCACAGAATTATTTGAGTGTACATCGAAGGACTCATACAGGCGAGCGACCACACAAATGCACCCACTGTGATAAACGTTTCACGCAGAGGACGACTCTGGTTGTACATCTGCGAGGACACACGGGTGATCGACCTTATCCTTGCTCCTTTTGTCACAAATCTTTTGCCTCGAAGACGATGCTGAACTCTCATCTGAAAACCCACGCGAAGCAGAACGCTCGAGCGCAACAGGAACAGGATCAACAGCATTTGCATCAACAGCAGCAGCCACAAATTCAACAACAAAAAGAGGAACATTCTTTAGAAACTGTTACTACTGTTTTGCTTCCTAGTTAG
- Protein Sequence
- MRYFVSKLDVLPPQNHQCCDGSNIKVYSTDASGILISDQLEKTDTNGSEILVADGILHCNLCGIGFVSEQELTMHLKTHEEQEAIEKEDPFDCEQCDRVFNTTTVVRKDQQLHSDDKVHICETCGYSSAHRQNLVSHQRRHNFEYKFHCEICGAGFYTRNTYQEHQLVHSREKPFQCDICNATFRYRQGLRLHAKLHLPDYVPPQKKHHCELCHKSFSRKQVLLVHMRTHGNVGPQNEYVCHICGKSVSSKTYLTVHVRKHTGEKPHVCDLCQKAFISQNYLSVHRRTHTGERPHKCTHCDKRFTQRTTLVVHLRGHTGDRPYPCSFCHKSFASKTMLNSHLKTHAKQNARAQQEQDQQHLHQQQQPQIQQQKEEHSLETVTTVLLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01393738;
- 90% Identity
- iTF_01392971;
- 80% Identity
- -