Basic Information

Insect: Synergus umbraculus
Gene Symbol: -
Assembly: GCA_900474325.1
Location: UCOK01018743.1:281537-286777[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00026 0.03 15.3 3.9 1 23 262 284 262 284 0.98

2 11 0.023 2.6 9.2 11.8 1 23 290 312 290 312 0.95

3 11 6.1e-05 0.0069 17.3 6.6 1 23 318 340 318 340 0.99

4 11 0.00042 0.048 14.7 1.6 1 23 346 368 346 368 0.95

5 11 1.3e-06 0.00015 22.6 1.9 1 23 374 396 374 396 0.97

6 11 2.7e-05 0.0031 18.4 1.1 1 23 402 424 402 424 0.97

7 11 6e-05 0.0068 17.3 1.5 1 23 429 451 429 451 0.97

8 11 1.9e-05 0.0021 18.9 0.0 1 23 457 479 457 479 0.97

9 11 0.04 4.6 8.4 0.5 2 23 491 512 490 512 0.95

10 11 9.1e-07 0.0001 23.0 2.0 1 23 578 600 578 600 0.98

11 11 2.6e-05 0.003 18.5 4.6 1 23 610 632 610 632 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00026	0.03	15.3	3.9	1	23	262	284	262	284	0.98
2	11	0.023	2.6	9.2	11.8	1	23	290	312	290	312	0.95
3	11	6.1e-05	0.0069	17.3	6.6	1	23	318	340	318	340	0.99
4	11	0.00042	0.048	14.7	1.6	1	23	346	368	346	368	0.95
5	11	1.3e-06	0.00015	22.6	1.9	1	23	374	396	374	396	0.97
6	11	2.7e-05	0.0031	18.4	1.1	1	23	402	424	402	424	0.97
7	11	6e-05	0.0068	17.3	1.5	1	23	429	451	429	451	0.97
8	11	1.9e-05	0.0021	18.9	0.0	1	23	457	479	457	479	0.97
9	11	0.04	4.6	8.4	0.5	2	23	491	512	490	512	0.95
10	11	9.1e-07	0.0001	23.0	2.0	1	23	578	600	578	600	0.98
11	11	2.6e-05	0.003	18.5	4.6	1	23	610	632	610	632	0.97

Sequence Information

Coding Sequence: ATGCATACCTTCTTACCGGGACTAGTAGTTGAGAaGACGGAGGGGCCTACCACAGTAGCGGCTAGCCAGACGAACAGTTCTATTACCACCCTAACGAACATGTGTACCACTCCCGGCAATGCAGGTGCTGGGTTCGGGTATGCTTGGTCGTTCGGCGGACCTGGTACAGAGACTCGCGAGAACACTCAGAGTGACCTCACAACAAACATCAGCTACGCAGTCAACAATAACCAAGATCAGGGCTCCAGTCAAAAAATCCAAGTGGACATCAAACCGGCTAAGATCGCTAATAGCGCCCACCGTCGTCCCATGTTCGCAATGAATGAGAGTTGTCAACAGACGCCGACGACCCACCAAGGCCACACAGGAGCACACAATCAAACTCACGGTACGCACGTGCGAACCAAAAAGCATCACGACGTATTTTCCCTAACCTGCGATAAAGGTGGTTGCAATTGCGACGCCGCTCACCCCACGCCCCCACCTTCATTATTTCCAAATACTTTAGTTTTTACCACAGCAGATAAGCACGCCATGAGCAAGCATTTCATGACTCCCCTCGGACCGCTGCAGTTGACCGCGGAAGAGTGCAATGAAATCCTTATGAAGAGGGCAGCAGCCGCCTCCAATCAAGCCAACGCCAACAATGTAGCGGCTAGTCAAACGGACACCTCAACCCACTTCGGCCACGTCCTCACCCATGTCAACACAACCCAAATCGAGACCAAGGTCAAGACACAACAGGACATGGGGAGCCAGGTTCGCGTCCCCAAGGAGAGGCCGTACTCCTGTTCCGAGTGCGGAAAGTCGTTTCTTCTCAAACATCATCTTACAACGCATGCGAGGGTTCACACAGGAGAAAGACCCCATATTTGTGTGCATTGTGGCAAAAGTTTCGCGCACAAACATTGTCTTCACACTCATTTGCTTCTGCATAGTGCGGAGAGACCATATCAGTGCCGCGAATGTAAAAAGTCCTTCACACTGAAACACCATTTAGTAACGCACACTCGTGTTCATACGCGGGAACGACCGTTCGTATGTCAAGAGTGCGGCAGAGCTTTTCCTTTGAAGCGTCATCTAGTGACCCATAGCAAATTCCATTCCGGAGAGCGACCCTTTGTGTGTGAGGAGTGTGGAGAGTCCTTCTCGCAGAAGGATCATCTCACGATGCATTCGCGCTTCCACGGCAGTTTACATCCATTTGTTTGCCACGATTGTGGCGCCACTTTCCAGAGGAAATTCGAGTTGGTCAATCATGGAAGGCTGCATGGCAGAGTGCCACATTCATGTAATGTATGTGGAAAAGAGTTCTTGCAGAAGAGAACATTGTTGGCTCACATGCGACTGCACACTGGGGAAACGCCTTTTGCCTGCACAGTTTGCGGAGAAGCATTCCCGAGGAAGGCGGACCTAGCCGTACACGCCAAGATACATAGTAATAATACGGATACTGACGAAAAGTCACTCAGTTGCAGGGATTGCGGTTTGGGGTTCCCGAATCGGGAAGCACACACGTTGCACTTAAGGTTACATACTGGCGACAGGACACTAGTAACCGATCTCTGTAGTCTAACAGCAGCCTTCCAACAAACTCCAGGACACTTCCTCAATCCCAACACCTCCGGCACTCACcagATGAATGGACCGATTGGAACTCCAAGTGTGAGTCACATGCACGGTGCAACGCAGACCTCTCCTCCAGTGGGCTCAGGACCCAAACCAAAGCCTCACGTCTGTCCTGACTGTGGTCGTGGCTTCGCACAGAAGCACGGGCTCTCTCAGCATCAACGTCGTCACTCGGACGGAAGTTGTCACATAAGGTCGCATGTTTGTGACAAATGTGGGAAAGCATTTTTCCAAAAGAATCACCTCTTACTGCATCAGCGACAGCACATGGATCCGCCACCAAGCATATTGCGCCAACAACAAAGACAAGCAGCTCAGGCAGCTGCTCAGCAAGCCCAGCAACAGCAGCAACAAAATCAACAACAGCAGGTGCAACAACAGCAACAGGTACAACAACAGCAAGTTCAACAACAGCAACAGCAGACGTGTACCGTTGACACGAAAGCGATTCAACTGCAGGCCATACAGCAGCAAGTACAGCAGCAAGTTCAGCAGCAGGTTCAACAACAGGTTcaacagcagcaacaacaacaacagcagcagcaacaacaaGCTTGTGCTGTGGACACGAAAGCAATACAATTGAACGTCACCATGTGA
Protein Sequence: MHTFLPGLVVEKTEGPTTVAASQTNSSITTLTNMCTTPGNAGAGFGYAWSFGGPGTETRENTQSDLTTNISYAVNNNQDQGSSQKIQVDIKPAKIANSAHRRPMFAMNESCQQTPTTHQGHTGAHNQTHGTHVRTKKHHDVFSLTCDKGGCNCDAAHPTPPPSLFPNTLVFTTADKHAMSKHFMTPLGPLQLTAEECNEILMKRAAAASNQANANNVAASQTDTSTHFGHVLTHVNTTQIETKVKTQQDMGSQVRVPKERPYSCSECGKSFLLKHHLTTHARVHTGERPHICVHCGKSFAHKHCLHTHLLLHSAERPYQCRECKKSFTLKHHLVTHTRVHTRERPFVCQECGRAFPLKRHLVTHSKFHSGERPFVCEECGESFSQKDHLTMHSRFHGSLHPFVCHDCGATFQRKFELVNHGRLHGRVPHSCNVCGKEFLQKRTLLAHMRLHTGETPFACTVCGEAFPRKADLAVHAKIHSNNTDTDEKSLSCRDCGLGFPNREAHTLHLRLHTGDRTLVTDLCSLTAAFQQTPGHFLNPNTSGTHQMNGPIGTPSVSHMHGATQTSPPVGSGPKPKPHVCPDCGRGFAQKHGLSQHQRRHSDGSCHIRSHVCDKCGKAFFQKNHLLLHQRQHMDPPPSILRQQQRQAAQAAAQQAQQQQQQNQQQQVQQQQQVQQQQVQQQQQQTCTVDTKAIQLQAIQQQVQQQVQQQVQQQVQQQQQQQQQQQQQACAVDTKAIQLNVTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01131010;
90% Identity: iTF_00879928;
80% Identity: -