Basic Information

Insect: Synergus umbraculus
Gene Symbol: -
Assembly: GCA_900474325.1
Location: UCOK01009015.1:96570-102824[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.4 3.9e+02 2.4 0.9 1 23 381 403 381 403 0.81

2 18 0.0025 0.28 12.2 0.2 2 23 412 434 411 434 0.95

3 18 0.0011 0.12 13.4 0.4 1 23 437 461 437 461 0.92

4 18 1 1.2e+02 4.0 1.8 2 23 486 507 485 507 0.92

5 18 0.0028 0.32 12.1 0.2 1 23 515 538 515 538 0.95

6 18 0.0044 0.51 11.4 2.3 1 23 544 568 544 568 0.90

7 18 0.0019 0.21 12.6 6.5 1 23 652 674 652 674 0.98

8 18 0.0073 0.83 10.8 1.2 1 23 681 704 681 704 0.92

9 18 0.00012 0.013 16.4 3.1 1 23 710 732 710 732 0.98

10 18 0.00012 0.014 16.4 0.8 1 23 738 760 738 760 0.97

11 18 0.00013 0.015 16.2 0.9 1 23 766 788 766 788 0.97

12 18 0.099 11 7.2 3.8 1 23 801 823 801 824 0.95

13 18 3.7e-05 0.0042 18.0 1.9 1 23 838 861 838 861 0.96

14 18 0.00056 0.064 14.3 0.3 1 23 869 892 869 892 0.96

15 18 3.2e-06 0.00036 21.3 0.5 1 23 898 920 898 920 0.98

16 18 0.00013 0.015 16.3 4.4 1 23 926 948 926 948 0.98

17 18 1e-05 0.0012 19.8 0.8 1 23 954 977 954 977 0.98

18 18 0.089 10 7.3 0.2 2 23 984 1005 983 1005 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.4	3.9e+02	2.4	0.9	1	23	381	403	381	403	0.81
2	18	0.0025	0.28	12.2	0.2	2	23	412	434	411	434	0.95
3	18	0.0011	0.12	13.4	0.4	1	23	437	461	437	461	0.92
4	18	1	1.2e+02	4.0	1.8	2	23	486	507	485	507	0.92
5	18	0.0028	0.32	12.1	0.2	1	23	515	538	515	538	0.95
6	18	0.0044	0.51	11.4	2.3	1	23	544	568	544	568	0.90
7	18	0.0019	0.21	12.6	6.5	1	23	652	674	652	674	0.98
8	18	0.0073	0.83	10.8	1.2	1	23	681	704	681	704	0.92
9	18	0.00012	0.013	16.4	3.1	1	23	710	732	710	732	0.98
10	18	0.00012	0.014	16.4	0.8	1	23	738	760	738	760	0.97
11	18	0.00013	0.015	16.2	0.9	1	23	766	788	766	788	0.97
12	18	0.099	11	7.2	3.8	1	23	801	823	801	824	0.95
13	18	3.7e-05	0.0042	18.0	1.9	1	23	838	861	838	861	0.96
14	18	0.00056	0.064	14.3	0.3	1	23	869	892	869	892	0.96
15	18	3.2e-06	0.00036	21.3	0.5	1	23	898	920	898	920	0.98
16	18	0.00013	0.015	16.3	4.4	1	23	926	948	926	948	0.98
17	18	1e-05	0.0012	19.8	0.8	1	23	954	977	954	977	0.98
18	18	0.089	10	7.3	0.2	2	23	984	1005	983	1005	0.93

Sequence Information

Coding Sequence: ATGGAATTTGCTTTATCAGACAGCAACGAATCCGAAGGATTACTGCATAAAGaTTCGTCGACTAAATCGCAAGATTCAAAAATATGTAGGTTGTGTGGCATGAATACCACCAATtcagttgaaatttttagtaaaaaagaTCCTGTTGCACAAAAACTAGATTACGTTCTGCCAATAAATattttcaaagaaGATAATGTACCAGTCATTGTTTGTAAAAACTGTTGCACAAAAATCAACGTTCTTAGCGAATTTACAACTCAGTGTTTACAGAATGAGCAAAAACTTTTAGAAGTAGCAACTTTATTATCTTCTACAGAAAACGAGCTTGTAGAAACAAAGAAAGATGCCGCAAAATTCCAGTTGAAACAAACGTGTCCACATTTTTATACGAATTTACTCATTCCGCAGAATAAtgaatcatttaattttcaaaatgagcTTCAGTTTTCATTATGCGACGATAACGCCTCAAATTtagaattggaaaatattattaacgaagctatttctttgaatctaGAATCGGAGAGCATCTTAAACGACATTACAACTTTGAATTTAGAAACCGATACAATCTTAAATGATTTTGCCAATTCAAATCCGAAATGCgatgatattttaaacgaaACAACCCCTTTGAATGTAAAAGAGTCAAAATCAATTTCTGAAGTTTCAAAACCACTTCAAGAAATATCAAAaccaatttttgaagaatcaAAAGAAATCTGCGCAGCATCAAAACCAATTTTAGATCAAGAGCTTGAAATTCAGTGCACGAGGATTCAAAGTCTAAGTAGTGAAAAACTAACTGATATAGAGATATTGGATGACCTTAACAATGAGGTCAACTTAGAGAAGAAGTCGATTAAGACGAAAAAGCGAAGCCTAAAagtgaagaagaaaagaaaatcgaaGTTGGGATTTCCCAAATCAAAAAAACAACGTAAAGAGATTATTGACTCTTttcaaaatgagaaaaaagacttgcaatgcttttcatgcaatttagaatttctttcACGAGATCaatatctttttcatttaGAGCAGCATAAAAATCGAAACTGTGAAAATTCCTGTCTTCCAGGTAAAACTACAAGTTTAGAGGAAGCTTCTGATTTTAATTCAGAAGATAAATTTACTTGTGAGATTTGCCAAGCATTGTTTATTCAGAAGGAGAGATACGACTTTCATATGCAGTTCCATGCAAAGGGAGATTTGGATGTTTTAAAATGTCcccaatgcaataaaatattccaaacCGAAACCGTCCTTTGGGATCATTATCAGGTTGAACATAAAGATTTTTCATGTGTTGGATGTGACAGAATATTTGAAAGGAAAACGAGTTTAGATTATCATTTGAAAATGTCGGGTCACTCAAatgttgagaaaattttagaagaggagaaaattcaaataacgGATTCATCtaagtcaaaaatattgataacTTGTGCCAAATGCGGAGCTCGATATCGTCACCAGGAAAGATACGAATTCCATGTGAAAAGACATGAATTAGGAGAAATAAACCAATTTATTTGTACAGAATGTGAGAAAGCATTCGCCAATGAAAACGTTTTATGGGATCATTATCAGTATACACACAGAAAAACCGAaagttttaattgtttaacctgtggaaaagtttttctaaagcagtatcttttaaataaacacCAACTCAAGTTCAAACATGAGGGCAAAAAAATTGAGGTTGAATCAAATAGCAAAAATCAAcgttttccaatggagaaaaatggaatgaaTTCTCAAATCAAAGATGCCGTCCCACCTAAATTTCTGGACTGCGTTCTTTGTGGAGAAccagtttcaaattttgatcCCGATTCTCTGAATGACGTAGTAACTTGTGCCAAATGTAAGACACCTGGACTCTCTTTACAAGTCGATTCTGATGGTGCCAAAGTACTTTCCCGTCGAGAATATCATTGCAATTTATGTTATAAACATTTCTCGACTAAAGATAGATTAGAATATCATATAATGCGTCATTCGGAAAATATGGATGAATTTATTTGCAGTAATTGTGGCAAAAAACTCAGCACCGAACAGGCACTTTTCGAGCATCATCTCTTTGTTCATAAAGGAGCAAGACCTCATGTCTGTGACTTATGTGgtaAATCCTACCAATTTCGAACGAGACTCAGGGAACATATGAGAACGCACAGTGGAGAAAGACCTTTTGCCTGCGAATTTTGTGGCCAGGATTTCATGACGAACAACTCTTTGCGCTCTCACGTAAAAACCCACCTCAGCGATAAGAAATTTCCTTGCCAACTCTGTTCAAAGCTCTTTCGACGTCAGCAGGACCTAAATGAACACCTGGAACGTCACTGGAAAAACGACAAATCCCTAAACTTATCTAGATTCTTCCACTGCGAAAATTGTTCCGAATTTTTTCCAACTATTCGCGTTTTAAAAACCCATTTAAAAGAGCACCACGGAATTGAAAAAGGAGATCTCACTGATCTCCATCCTTGGTTCGAGTGTGAAGACTGTCCAGAGAAATTCAAACACCAAATGTCCCTGAAATCTCATAGAGAAAAAGTCCACAAGGGGAAAACTAAACCGGTTTATCGTTGCGATAAATgtgatataatttataaaacggCGAGACTTTTGGCAAGTCAcgtaaataataatcatggagGGGGAAAAAGATACAAATGTGCCCAATGTGGAAAGGAATATAATCAGTCAAAGTCGTTACAAAATCATATTTTGATTCACACTGGTGAAAAACCATTTAATTGCGAAATTTGTGATATGACTTTTAGGACCAGGGAGTCTCGAAATCATCATCAGAGAAAACACACTGGGGAAAAACCTTATAAGTGTCCAGGATGCGATAAAACTTTTGGCACTGCTGGACAGAGAAGAGAACACAGAAGGAAAACTCATGAAGATGGAAACGAACTGCCTTGTCCTGAATGTGGTAAAATTTGCTTTGGTGAACGCGGAGTTCGTAGTCATTTGACTATTCACTCAATTGAGAAGCGCAAAATGCTAgctttgaattaa
Protein Sequence: MEFALSDSNESEGLLHKDSSTKSQDSKICRLCGMNTTNSVEIFSKKDPVAQKLDYVLPINIFKEDNVPVIVCKNCCTKINVLSEFTTQCLQNEQKLLEVATLLSSTENELVETKKDAAKFQLKQTCPHFYTNLLIPQNNESFNFQNELQFSLCDDNASNLELENIINEAISLNLESESILNDITTLNLETDTILNDFANSNPKCDDILNETTPLNVKESKSISEVSKPLQEISKPIFEESKEICAASKPILDQELEIQCTRIQSLSSEKLTDIEILDDLNNEVNLEKKSIKTKKRSLKVKKKRKSKLGFPKSKKQRKEIIDSFQNEKKDLQCFSCNLEFLSRDQYLFHLEQHKNRNCENSCLPGKTTSLEEASDFNSEDKFTCEICQALFIQKERYDFHMQFHAKGDLDVLKCPQCNKIFQTETVLWDHYQVEHKDFSCVGCDRIFERKTSLDYHLKMSGHSNVEKILEEEKIQITDSSKSKILITCAKCGARYRHQERYEFHVKRHELGEINQFICTECEKAFANENVLWDHYQYTHRKTESFNCLTCGKVFLKQYLLNKHQLKFKHEGKKIEVESNSKNQRFPMEKNGMNSQIKDAVPPKFLDCVLCGEPVSNFDPDSLNDVVTCAKCKTPGLSLQVDSDGAKVLSRREYHCNLCYKHFSTKDRLEYHIMRHSENMDEFICSNCGKKLSTEQALFEHHLFVHKGARPHVCDLCGKSYQFRTRLREHMRTHSGERPFACEFCGQDFMTNNSLRSHVKTHLSDKKFPCQLCSKLFRRQQDLNEHLERHWKNDKSLNLSRFFHCENCSEFFPTIRVLKTHLKEHHGIEKGDLTDLHPWFECEDCPEKFKHQMSLKSHREKVHKGKTKPVYRCDKCDIIYKTARLLASHVNNNHGGGKRYKCAQCGKEYNQSKSLQNHILIHTGEKPFNCEICDMTFRTRESRNHHQRKHTGEKPYKCPGCDKTFGTAGQRREHRRKTHEDGNELPCPECGKICFGERGVRSHLTIHSIEKRKMLALN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01392220;
90% Identity: iTF_01392220;
80% Identity: -