Basic Information

Insect: Synergus umbraculus
Gene Symbol: -
Assembly: GCA_900474325.1
Location: UCOK01000165.1:11768-16766[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00065 0.075 14.1 1.8 1 23 323 345 323 345 0.95

2 12 0.00064 0.074 14.1 0.8 1 23 350 374 350 374 0.94

3 12 0.0014 0.15 13.1 4.3 2 23 513 535 512 535 0.96

4 12 0.006 0.68 11.0 0.2 1 23 549 572 549 572 0.88

5 12 2.5e-07 2.8e-05 24.8 3.6 1 23 578 600 578 600 0.98

6 12 2.8e-06 0.00032 21.5 1.0 1 23 606 628 606 628 0.98

7 12 0.0013 0.15 13.1 1.8 1 23 634 656 634 656 0.96

8 12 4e-09 4.6e-07 30.5 1.0 1 23 662 684 662 684 0.99

9 12 3.2e-05 0.0037 18.2 5.4 1 23 690 712 690 712 0.98

10 12 0.031 3.5 8.8 3.1 2 23 719 740 718 740 0.97

11 12 7.9e-06 0.00091 20.1 1.5 1 23 746 768 746 768 0.98

12 12 2.7e-07 3e-05 24.7 1.5 1 23 774 796 774 796 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00065	0.075	14.1	1.8	1	23	323	345	323	345	0.95
2	12	0.00064	0.074	14.1	0.8	1	23	350	374	350	374	0.94
3	12	0.0014	0.15	13.1	4.3	2	23	513	535	512	535	0.96
4	12	0.006	0.68	11.0	0.2	1	23	549	572	549	572	0.88
5	12	2.5e-07	2.8e-05	24.8	3.6	1	23	578	600	578	600	0.98
6	12	2.8e-06	0.00032	21.5	1.0	1	23	606	628	606	628	0.98
7	12	0.0013	0.15	13.1	1.8	1	23	634	656	634	656	0.96
8	12	4e-09	4.6e-07	30.5	1.0	1	23	662	684	662	684	0.99
9	12	3.2e-05	0.0037	18.2	5.4	1	23	690	712	690	712	0.98
10	12	0.031	3.5	8.8	3.1	2	23	719	740	718	740	0.97
11	12	7.9e-06	0.00091	20.1	1.5	1	23	746	768	746	768	0.98
12	12	2.7e-07	3e-05	24.7	1.5	1	23	774	796	774	796	0.98

Sequence Information

Coding Sequence: ATGGAACAGCAAGTTTCTTTATATGAATCGACAATTTGTCGATTATGTGCCGAAAACAATGGAAGCGGAGAACCCCTTTTTCGGGAAAATGCGGAAGAACCGGAATTAAGCACGATGATAAATCGCTATTTGCCACTCAAGGTCCAGAAGGATGGAAAATTACCGCAGACAATTTGCCCCGGTTGCAACATTCAATTGGAATCAACGATTCAGTTTTTCGATTTGGTGGTGGCAggtcagaaaaaaattcgagaTCTGTGGAAGCAGCAACTCGAAGCGGAACGAAAAGCCAAGCGCGAAACTGATCGTTTAAGGCGCGATGATTCCATATTAACGATTGAAACTGTGGATACGACCGAGGGAAAAGAAATTGCAGTAAATCTAGAGAATATTGAGAATGACGAAAATGTTGAGACTACAGGAATTGAAAACACTGAAGAGGATGGAAAAGAGGATGGTCTCGATCAACAAATTTACATAAACATTCTACCCGATGGTTCCATGTACTCCTCCGATCATGAAATAAAACTACAAATGGAAGGCTTAGAGAGACCGAGAAGAAAAAGAGGACGGCCTCCAAAAATGGATTCCAAgACTGAAACTTTGGAAGATATTCAAGAAGAAATGAGTCAAGGTGAGGAGGATAAACAGGAAGAAGATATGGAAGAAGATGACGATGGAACCGGAAGGCGAcgtagaaaaagaaaaattccacaaaggTTTAAGGAAGCCGTACAAGGAAAAGAGCTTGATAGAATATTCAAGGAAGAAGGAGTCTATGACGAAGGAGATATTGATTATAATGATGATTATTTCGATACGACTGACGAATTTAAAACTCTGACCACTCCAGATGGTAACGAAATTATCGGACACTTAGAGACTGAGGAAGGAAAAGACTTAGGCGAGTTGGTGGTCATAAACAGAAACAGAGGTCGAGGTAGACCtcgaagaaagaaaaacaaatatttctgCAATATTTGTGGAAAAGGATTTAATCaacttaataaatatacttcACATAAGAgtctacataaaaatattaaatataaatgccTGGAATGTGAGATACAGTTTTCGAGCGAGGATAATTTCCTTCTTCATCAAAAAACAACTTCTCATACCGGTCGCGAAgtttttgaagttttgaaaGAAGAAGACGTAGCAAAGCCTGAAATTGTTATCCCAACTGCGGAACCTGTTGTGACTTCTACTGAAGGAAATTCTGAAGCAAGCATTGTAATCCCCGACAATCAATACAAGAGTGAAAATACGGAAGTGATTCCAATGGAAGTTAATCCAACTGAGGAGAATCCGACTGAAGAGattctttctgaaaaaaatgctTCTGAAGAAATTCCTTCAGAAGATTCTTCTGAAAAGAATTCTTCAGAAGAAAATACTTCGGAAAAAGATCTTTTTGAAGGAAATCCTTCTGAAAAAGATCCTCTTGAAGAAAACCCTTGTGAAAAAGATACTTTTGAAGGAAATACCTCTGACAAAAATCCTTCCGATGAAAAGGCAGAGAGCTCAATAAAATGCGATCAGTGTCACCGATCGTTTTCCTCTGAAGAAGATAAGGAAAAACACATGAAGCATGATCACAGTAGTGAGAAACAAACGaattccaAATGCGACAAGGGATTCCCGTGCGATATTTGCGGAAAAGTCCTCAATCATCCAAGTTCCATTTTGTATCACAAAGAGGCGGAGCACAATAATGGCAGACGATTTGTTTGCAACAAGTGTGGAAAGAGTTTCAAGCACAAGCAACTTTTGCAGAGACATCAACTTGTCCATTCAGAAGAAAGGCCCTATGTTTGCAAATCCTGCAATGCGAGTTTTAAGACGAAGGCAAATCTTATTAATCATCAATCGACACACActggagagaaaaaatatttatgtgatCTTTGTGAACAGCAGTTTGCTCACAAAACGAGTCTTACTTTGCATTacagATGGCACTCGGGCGATAAGCCTTACCAGTGTAAAGTCTGCAATAAAAGCTTTTCACAAAACGGAAATCTCCAAGAACACATGCGAATTCACACTGGAGAGAAACCCTATTGCTGTGAAACTTGCGGACGTAAATTTACAACTTCTTCTCAATTTAAACTGCATGTTAAGCGTCACACAGGTGACAGACCCTGGAAATGTGAATTTTGTGTAAAAAGCTTTTTGCACAAAGATACCTGGAAAACTCACGTTCGCAGACATAAAGGAGAAAGACCCTTCAAATGCTCAAAATGTACTCGAGCGTTTACGGAACAATGGGCCTTGAAAAAACATCTACGTTTGCATACTGGAGAGAAGCCTTATTCCTGTGATGTATGTGGAAAAGCCTTTGCAGATTGCTCAAATTTAACAAAACACAAAAAGGTGCACAAGGAACACAATAAAGCGATGGATGTAAGTGAACTACCTGAAGGGACAGAAATCAACACAGTTTGGGAGATTTTGCCTAACGCACCAGAAATGAGGGATAATTCGATTGGAAATCGAATAACTGAAGTTATAACGACTGATAACATACCAGAAGATGAAGTTCCTCAGATTTATTACGTCACTTATCAAAATCAAGATATAATCGAACAACCTAGAATGTTACAATTTAtcgATTCTTCTGATGTGATTGAACTTAAAGAAGATTTAACAACTATTAGTGCTGACACTCTGCGTACAATTCGAATTCAAGATGATGAATTTGTCACTGAAGAAGCATTTATTGAATGCCAAGAAAGTAACGAAAGCTTCGAGGACGAGATTAACGACTTAGTTCAGaTCATGGATAATGAAGGAAATGTGATTCCTCTGTCGCTGCAACACGCACGTCAACTTCTAGATGGTCAGGTCGTAGTCACTCAGGGAAGTGATGGCCAGTTTGTAAAAGTGAATTCGGGAGTTATACCACAAAATCTATTTACTCAGTTAGGTGTAGATATGAGTGAAGTTATACAATCTAATCCCGTGGTTGTAACCAGAGGAGGAgcaggaggaggaggaggaggaggatcGGGAGGAGGTGTAGGAGGAGGTGGAGGAAGAAAGAGTTCAGCGGCATACCGGAATCCcgatagaaatattgaaaggaACACtactaaattctaa
Protein Sequence: MEQQVSLYESTICRLCAENNGSGEPLFRENAEEPELSTMINRYLPLKVQKDGKLPQTICPGCNIQLESTIQFFDLVVAGQKKIRDLWKQQLEAERKAKRETDRLRRDDSILTIETVDTTEGKEIAVNLENIENDENVETTGIENTEEDGKEDGLDQQIYINILPDGSMYSSDHEIKLQMEGLERPRRKRGRPPKMDSKTETLEDIQEEMSQGEEDKQEEDMEEDDDGTGRRRRKRKIPQRFKEAVQGKELDRIFKEEGVYDEGDIDYNDDYFDTTDEFKTLTTPDGNEIIGHLETEEGKDLGELVVINRNRGRGRPRRKKNKYFCNICGKGFNQLNKYTSHKSLHKNIKYKCLECEIQFSSEDNFLLHQKTTSHTGREVFEVLKEEDVAKPEIVIPTAEPVVTSTEGNSEASIVIPDNQYKSENTEVIPMEVNPTEENPTEEILSEKNASEEIPSEDSSEKNSSEENTSEKDLFEGNPSEKDPLEENPCEKDTFEGNTSDKNPSDEKAESSIKCDQCHRSFSSEEDKEKHMKHDHSSEKQTNSKCDKGFPCDICGKVLNHPSSILYHKEAEHNNGRRFVCNKCGKSFKHKQLLQRHQLVHSEERPYVCKSCNASFKTKANLINHQSTHTGEKKYLCDLCEQQFAHKTSLTLHYRWHSGDKPYQCKVCNKSFSQNGNLQEHMRIHTGEKPYCCETCGRKFTTSSQFKLHVKRHTGDRPWKCEFCVKSFLHKDTWKTHVRRHKGERPFKCSKCTRAFTEQWALKKHLRLHTGEKPYSCDVCGKAFADCSNLTKHKKVHKEHNKAMDVSELPEGTEINTVWEILPNAPEMRDNSIGNRITEVITTDNIPEDEVPQIYYVTYQNQDIIEQPRMLQFIDSSDVIELKEDLTTISADTLRTIRIQDDEFVTEEAFIECQESNESFEDEINDLVQIMDNEGNVIPLSLQHARQLLDGQVVVTQGSDGQFVKVNSGVIPQNLFTQLGVDMSEVIQSNPVVVTRGGAGGGGGGGSGGGVGGGGGRKSSAAYRNPDRNIERNTTKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01392964;
90% Identity: iTF_01393733;
80% Identity: -