Basic Information

Insect: Synergus umbraculus
Gene Symbol: -
Assembly: GCA_900474325.1
Location: UCOK01006988.1:17180-19206[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.039 4.5 8.5 0.5 2 23 126 147 125 147 0.93

2 11 0.0071 0.82 10.8 4.1 2 22 213 233 212 234 0.89

3 11 0.0014 0.16 13.0 4.6 1 19 303 321 303 326 0.93

4 11 6.9e-06 0.0008 20.3 3.8 1 23 332 354 332 354 0.98

5 11 6.3e-07 7.2e-05 23.6 2.6 1 23 360 382 360 382 0.98

6 11 5.1e-06 0.00059 20.7 0.9 1 23 398 420 398 420 0.98

7 11 2.3e-07 2.7e-05 24.9 1.9 2 23 427 448 426 448 0.98

8 11 7.8e-09 9e-07 29.5 2.3 1 23 454 476 454 476 0.98

9 11 6e-06 0.00069 20.5 5.5 1 23 482 504 482 504 0.97

10 11 1.3e-05 0.0015 19.4 5.4 1 23 510 532 510 532 0.98

11 11 3.9e-06 0.00045 21.1 4.6 1 23 538 560 538 560 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.039	4.5	8.5	0.5	2	23	126	147	125	147	0.93
2	11	0.0071	0.82	10.8	4.1	2	22	213	233	212	234	0.89
3	11	0.0014	0.16	13.0	4.6	1	19	303	321	303	326	0.93
4	11	6.9e-06	0.0008	20.3	3.8	1	23	332	354	332	354	0.98
5	11	6.3e-07	7.2e-05	23.6	2.6	1	23	360	382	360	382	0.98
6	11	5.1e-06	0.00059	20.7	0.9	1	23	398	420	398	420	0.98
7	11	2.3e-07	2.7e-05	24.9	1.9	2	23	427	448	426	448	0.98
8	11	7.8e-09	9e-07	29.5	2.3	1	23	454	476	454	476	0.98
9	11	6e-06	0.00069	20.5	5.5	1	23	482	504	482	504	0.97
10	11	1.3e-05	0.0015	19.4	5.4	1	23	510	532	510	532	0.98
11	11	3.9e-06	0.00045	21.1	4.6	1	23	538	560	538	560	0.99

Sequence Information

Coding Sequence: ATGTTTatagttacaaaaaaaatagacaGTGAAAATATTAGTAAACTTTGTCGGACTTGTTTAAGAGAGGACAATGATAAAATGGTTTGTTTGTTTGTTGGACCTGCTGGATCATCACTGGCAGCAAAACTTCGCTCCTTATCTTGTTTAgagGTATGGCAAGGAGATGGCTTACCAGAAAAGATGTGTGATCGATGTGTTACTCGAGCGGAATCTGCACTTTTATATCGGGAGCAGTGCCGAGTCGCAGACAGAGCCTTAAGGCAAGCTGCATTGAAGgtTTCAGGCGTGACTTCCTACACGACAGTCTCTGGATGCAAACTCTATCAACAGAACCAAGGCTTTTTATCCATCCAAAATGCTCAAAAAACTCTGAAATGCATTGAATGTGGAGCAGTATTCATGAATTATCAGGAGCTTTGTCTTCACAGTAGAATACACATACCTTTTCTGCCCGAAAATAATATTCCACCTCAACACATGCATATCGTAGAATCCCAAAATACATGTCTCAATTTGAATCAGTTGcgtaataattcaattaatattcatataaataataccCAAGGACCCAGTCTTTTGTATTCAGCCCCAGAAGATAACTCAGAAGTACCCGATAGAGCTGCTTGTGCTCTTCACTGCTCTCTTTGCAACCACACTTTTACAAACAGAACGCAGCTTATAAACCACAGCTTTGctcatgaaaataaaattcgaaaccTGAGTTTTTCAGACGCAGATTCAcagcaaaatatttctttttctgaaaGTACACCTTTGAACTTCGAAGctcgtaaaatttttgaagagacCAAAGGCAAAAGCGCAGAATGCTTcgaatcgaattttttaatgcagAAGGATAAATTAAACTCAGGAAAGTTGGAAGAGACTAAgacaaaaaagtataaatgtGAGAAATGCAGTCGCTTCTTTTCACAAGAGTCTAAGTTGCAAAATCATTGTTTATTATCACATTCTGATCACCGGCCCTTTAAGTGCTTCAGGTGTCATAAAGCATATGCAtctaaaagtaaattaaacgCACACATGAGGTTGCATACGAAATCAAATGTTCATCAGTGTAAAATatgcagtaaaatttttacctACCCATCGTACTTGTTAGAGCATATGAAGACCCATAAATTGAAGAACCAGGAACTAAAAGatgagaaagaaatatttcggTTTGAATGTAATATATGCAAGAAGCGGTTTCGATTTGCTAAAGTATTGAATGCTCATTTGAGAATTCATAGTGGGACAGGCTTGTCACAATGCAATATTTgtgataagaaatttaatcaaaaatatagtttgaaaattcatctTCAAACGCACGAAGCGAAAAAGTTACACAAATGTGAGTATTGTGATAAATCTTTCACACAGAAAAGCAACCTCGTTGAACATATTAGAATTCACACTAAAGTGAAACCCTTCGAATGTAATTTGTGTAATAAGAGGTTCTGTCAATCTAGTCATTTGAAAAATCATGTAGCCTCTCATGACTCAGTTCGGCAACACCAATGTCAACTTTGTGGTAAAAGGTTTAAATTGGCGAATCATTTGAAGAGACATTTAAATTCCCACACCGGATCGAAGACTTATAGATGTGATAAGTGCAATCATGTATTTTCTCAAGCTTTTAGCTTGAAAAGACATTTGAAAAGGCATGATGAATCTTTACTTTAA
Protein Sequence: MFIVTKKIDSENISKLCRTCLREDNDKMVCLFVGPAGSSLAAKLRSLSCLEVWQGDGLPEKMCDRCVTRAESALLYREQCRVADRALRQAALKVSGVTSYTTVSGCKLYQQNQGFLSIQNAQKTLKCIECGAVFMNYQELCLHSRIHIPFLPENNIPPQHMHIVESQNTCLNLNQLRNNSINIHINNTQGPSLLYSAPEDNSEVPDRAACALHCSLCNHTFTNRTQLINHSFAHENKIRNLSFSDADSQQNISFSESTPLNFEARKIFEETKGKSAECFESNFLMQKDKLNSGKLEETKTKKYKCEKCSRFFSQESKLQNHCLLSHSDHRPFKCFRCHKAYASKSKLNAHMRLHTKSNVHQCKICSKIFTYPSYLLEHMKTHKLKNQELKDEKEIFRFECNICKKRFRFAKVLNAHLRIHSGTGLSQCNICDKKFNQKYSLKIHLQTHEAKKLHKCEYCDKSFTQKSNLVEHIRIHTKVKPFECNLCNKRFCQSSHLKNHVASHDSVRQHQCQLCGKRFKLANHLKRHLNSHTGSKTYRCDKCNHVFSQAFSLKRHLKRHDESLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01392967;
90% Identity: iTF_01392967;
80% Identity: -