Sumb007821.1
Basic Information
- Insect
- Synergus umbraculus
- Gene Symbol
- -
- Assembly
- GCA_900474325.1
- Location
- UCOK01016240.1:71943-75256[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.5 4e+02 2.3 0.3 2 18 23 39 22 39 0.89 2 12 2.3e-05 0.0027 18.6 0.9 3 23 283 303 281 303 0.96 3 12 9.3e-05 0.011 16.7 0.7 1 23 311 334 311 334 0.97 4 12 0.00015 0.017 16.1 2.6 1 23 368 390 368 390 0.98 5 12 3e-07 3.4e-05 24.6 1.6 2 23 439 460 438 460 0.97 6 12 0.00014 0.016 16.2 0.3 1 23 465 488 465 488 0.92 7 12 9e-07 0.0001 23.1 0.3 1 23 526 548 526 548 0.98 8 12 7.9e-07 9.1e-05 23.2 0.9 1 23 558 580 558 580 0.96 9 12 1e-06 0.00012 22.9 1.4 1 23 586 608 586 608 0.99 10 12 1.1e-05 0.0013 19.6 0.2 1 23 614 636 614 636 0.98 11 12 3.1e-05 0.0036 18.2 4.4 1 23 642 664 642 664 0.98 12 12 0.0019 0.22 12.6 0.2 1 21 670 690 670 691 0.94
Sequence Information
- Coding Sequence
- atGGAGGTAGAAGAATGCAAAAATAGCATTGAAAATATCAGAGCAACCGAACATGACTCTGATCAACAATGccgaatttgtttaaaatcctCTACTTCACACTGGGATTTGTTCAGAGatggaaaaaatattgctGGAAAATTGATGGCATTTGCTAATGTACAGGTGCAAGAAGGAGATGGATTACCCACAATCATCTGTCTCAATTGCCGTCATCTTATCGATGTATCATtcgattttaaatgtcaagtAGAGGAATCGGATTCAAAATTAAGACAAGCTTTGTTATCTAAAGATCCAACATTATCACTAACACATTCGATTAACAAAGTCGTAAAAGAAGCTATTTCGGTAGAATTCCCACAGCAAGGAATTCCTTGCAATGTCGAACATCACAGTGAACCTCTCAGTGATATTAGCACAAAGAAAATTGATCATTTCTCCATTCAACCAAATGAAGAGCTGACTCTAGCACCTCTAAATAATGTGGAAAGCATTATGACATTTGACATTAGTGGCAGTTGTGATCAAAGAAACCAAAGTACAAGTGAAGTGAAAGAAAGTAATTATTACAGGAATAATGAGaaacaagagattttagaaccATTTAAGGAAGAGCAATTGACTAGAGCTATTCAAGATATTCCGGTAACACAAGGTAATATGAATGCTTGCTTCGAAgaggaatttattaaattggaAGAAAGCGAAGGTTGTTTGCAATTAACTGATgataatatagaaaaaaaatcggcgTTATCAAAGAACACTGGATGTACTGCAGAGAATACTGATGACACTGATGAAGAGGAAATACCTTTAATACGTAGAACCCAAAGACAAAACTGTTCTCAGTGTGTAAAAACTTTCGCCACCAAGCAGGCATTAGAGAGGCACATGACTATGCATAAACAAAAGACGAAACTTCGTTATGTTTGTTACATGTGTGATAAACAATTTGCAACTGTGGAGAAGCTGAAAAGTCACTTACAAAGTAGTCATGAAAAAGATAAagagaaatcattaaaatatgcagaaaatatcaaaagaaCTGATAAATCGGACAAAAACAGCAGTTCTACAGAAAAGAGATCCTTCAAATTTACTTGCAAAGTTTGTTCCAAACAATTCACATACCAGAAATCTTTTATAACACATGCTAAAATTCATAGCGAGTGCGATTTGGAAGATATTGTCAGCGATTACTTGCCACCTAAACGTTCGGAAAGTCCACCTAAAATTAAAGAGcctgaagaagaagaagaagcagaagaggaagaagaagggGAAGAAGAAATCCTTGCGGATGGTTTACAGTGTACAAAATGTGGTAAACTGTTTGCAACAAAGAGAAATCTTAAGCGACATATTTTAACTCACACTGGTTTGAAGTACAACTGCCCCATGTGtggaaaagaattttcaagagtaGACAAAATGAAAGAACACGAACAGGCGAAACATAAAATAGAGTTATTTAGCCAATTTTCCGACAATGATGATGACGAGGGTACGGATAATGAGAATAAGGCCGACTCTGCTGAAAATCGCAAAaagGAAAAGTACAACAGACCACATCAGTGCACTATTTGCCCAAAAGCTTTCGCGCAACCACAATCTTTAGCTAACCACATGGAACGTCACAAACGCGTCAAAGATACTCAGAAGCGATTCCTGTGCGAAGTTTGTAGTAAATGCTTCGCTCAAAGTGGTTCTCTTGTCGCACATATGCGTACTCATACGGGTGTTAAACCTTACGTTTGCAACGTTTGTACTAAGGCATTTACCAAAAGCACTTACTTGCAATTGCATTTGCGAACCCACAGTGGAGAAAAACCGTATATTTGCCAGTACTGTAGTAGAGCGTTCGCGCGAGCCAATACTTTGGCTAGGCACATAACGATGCATACAGGGGAGGCGAAATACCATTGTCAGATATGTAATAAGTCATTCAGACGCTTGACTTCCCTTAATGAACACACCTACACTCACACCGGTCAGAGGCCTTACGCGTGTAAGATATGTGCAAAAAGATACAATAATGCAGGTTCTTTATACGCTCATACAAAAAAGTGCAAGTCTCAGCAACAATCCAGTGGTGTACCAACATACACAATCAATACCGAGTCGACGGATAACAACATTCAGAATAATGCAGGACCTCCAATGCTTTTATATTCTCAGaaaaaattagtagaaaacaCACCAGTGTGTCAATTAGCGCCTGCACCTCAATTTATGGTTGCCAATGTTCACAATCAAAAACCTCTTACCACTAATATAATTCAACCTTTCACAATTGAAGATCCGAATCTTTACGCGGTGAATGCAAAGcagtttaaaaattcgtaTTACGCAATATATCCGAATAtgtaa
- Protein Sequence
- MEVEECKNSIENIRATEHDSDQQCRICLKSSTSHWDLFRDGKNIAGKLMAFANVQVQEGDGLPTIICLNCRHLIDVSFDFKCQVEESDSKLRQALLSKDPTLSLTHSINKVVKEAISVEFPQQGIPCNVEHHSEPLSDISTKKIDHFSIQPNEELTLAPLNNVESIMTFDISGSCDQRNQSTSEVKESNYYRNNEKQEILEPFKEEQLTRAIQDIPVTQGNMNACFEEEFIKLEESEGCLQLTDDNIEKKSALSKNTGCTAENTDDTDEEEIPLIRRTQRQNCSQCVKTFATKQALERHMTMHKQKTKLRYVCYMCDKQFATVEKLKSHLQSSHEKDKEKSLKYAENIKRTDKSDKNSSSTEKRSFKFTCKVCSKQFTYQKSFITHAKIHSECDLEDIVSDYLPPKRSESPPKIKEPEEEEEAEEEEEGEEEILADGLQCTKCGKLFATKRNLKRHILTHTGLKYNCPMCGKEFSRVDKMKEHEQAKHKIELFSQFSDNDDDEGTDNENKADSAENRKKEKYNRPHQCTICPKAFAQPQSLANHMERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCTKAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICNKSFRRLTSLNEHTYTHTGQRPYACKICAKRYNNAGSLYAHTKKCKSQQQSSGVPTYTINTESTDNNIQNNAGPPMLLYSQKKLVENTPVCQLAPAPQFMVANVHNQKPLTTNIIQPFTIEDPNLYAVNAKQFKNSYYAIYPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392203;
- 90% Identity
- iTF_01391399;
- 80% Identity
- -