Sumb019282.1
Basic Information
- Insect
- Synergus umbraculus
- Gene Symbol
- -
- Assembly
- GCA_900474325.1
- Location
- UCOK01018598.1:220021-227314[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.074 8.5 7.6 0.4 2 23 207 229 206 229 0.91 2 28 0.14 16 6.7 1.4 1 23 241 264 241 264 0.95 3 28 0.036 4.1 8.6 4.2 1 23 277 300 277 300 0.94 4 28 0.0013 0.15 13.1 5.9 1 23 306 328 306 329 0.95 5 28 0.0027 0.3 12.1 0.3 2 23 335 357 334 357 0.95 6 28 0.037 4.2 8.6 2.4 1 23 362 385 362 385 0.95 7 28 1e-06 0.00012 22.9 0.4 2 23 392 413 391 413 0.96 8 28 4.6e-07 5.2e-05 24.0 1.0 1 23 419 441 419 441 0.97 9 28 0.00027 0.031 15.3 1.0 1 23 447 469 447 469 0.97 10 28 0.003 0.34 12.0 0.2 1 20 648 667 648 669 0.95 11 28 3.2 3.6e+02 2.5 9.3 2 23 673 695 672 695 0.94 12 28 0.034 3.9 8.6 1.1 1 23 700 723 700 723 0.94 13 28 9e-05 0.01 16.8 1.7 1 23 729 752 729 752 0.98 14 28 0.0093 1.1 10.4 4.6 1 23 757 780 757 781 0.96 15 28 0.0044 0.51 11.4 3.4 1 23 785 807 785 807 0.97 16 28 0.00024 0.028 15.4 2.5 1 23 813 835 813 835 0.97 17 28 0.0014 0.16 13.1 1.3 1 23 841 863 841 863 0.98 18 28 0.00013 0.014 16.3 1.6 1 23 869 891 869 891 0.97 19 28 0.00052 0.059 14.4 1.8 1 23 995 1018 995 1018 0.98 20 28 0.23 27 6.0 3.7 1 23 1087 1110 1087 1110 0.90 21 28 3.8 4.4e+02 2.2 0.1 2 21 1179 1198 1179 1199 0.92 22 28 0.004 0.46 11.6 2.9 1 23 1362 1385 1362 1385 0.97 23 28 0.16 18 6.6 1.2 2 23 1392 1413 1391 1413 0.95 24 28 0.00034 0.039 14.9 1.4 1 20 1418 1437 1418 1439 0.94 25 28 0.0047 0.54 11.3 1.5 1 23 1446 1469 1446 1469 0.97 26 28 0.00046 0.053 14.5 1.0 1 23 1473 1496 1473 1496 0.98 27 28 0.00055 0.063 14.3 0.2 1 23 1501 1523 1501 1523 0.97 28 28 0.00074 0.084 13.9 0.7 1 23 1529 1551 1529 1551 0.98
Sequence Information
- Coding Sequence
- ATGGATGATAACCGAGGGATATTTTTCTTTGGCAAAGAATCCGTAATGATGCGAAAGTGGCAGAttttggaatttgatgataagCCATATTATGCCTTCATACCTGAAAACGAGAACCCTTTGGAAGAAGATATGATAACTGAATACCTAGAGACCCAAGAAGACAAAGGAACATGTGATTATGTTAAACGCTTAGCTAAACCTGAACCTGTCTCTAACGTTGAAGTATCTGATAATTGCTCAAACAACGAACAGGAAGTGGATTACAATAATGAAGAACTTGAATCAGCAGAAACAGTAGAACATATTGAACTAGAGAATATAAAGCCCATCGAAAATGATTCAAACAAAGAAAACGAAGGAGGCGATGCTTTTGTATATCAGATGAAGGTAGATGGAAAAATGTTGACTATCGAGAAACATACAGAGAATCTCTTAGATTCGAATTCATTTGAGCAGGAATTTGGAAATGAAGTAGAGAATAATAtagaatatcttgaaaatgatGAGGAGGAACTTTGCAACTCCTTTTTACAGGAGAATGAATCTTcagtattaaaagtaaacaatTTGCCAAAATCTCCCCAAGAAAGTGAGAGCCTTCCTTCAAGCGTCTTGAAGTGCAAGGCATGTTCTGAAACTTTTGAAACCAACCTAGCTTTCAGGAAACATGTGGCATGGACCCACAAAAAGAGGGTCTGTATTCAGGAAAACGGGGCTTACATCTGTTCAGTCTGCGATTAtcagacttttaagaaaaattcattCGCAAACCATTTGGAAAGAAGGCACGAGACCTGGACGACAAAAATACCCAATAGCCTCTTTTTCCCTTGCACTGCCTGTGGGTTTGTTTGCAGTTCGAAGCACTCGTTACAATCCCATTTTATTCGGAAACACACCGACAATTTTGAACATCAGTGCAAGTTTTGTGAAAAACAGTTCAAGGTCAAAGGAGACCTTACAAACCACGTTAGATTCCATCACAAGGAGAAGCCTATAAGTTGTGATGTTTGTGGAAAGGTGTGTCAGAATACTGGATCCCTCTATGTACATCAGAAATGGGCACATTACAAACCAAAGTTCGAGTGCCACCTTTGTCATAGGAGAATGGTTACGCAGGAAAATCTAGATCAACATTTGGTCATGCAGCacgaaaaaagagaaaaaatagtcTGTGCTGTGTGTGGAAAGACCTTCACAAAAAAGGATTCCTTTAAAAGGCACATGGCTGTGCATACCGGAAAGAAACCACACTCTTGTCCGATATGTCCTAAAAATTTTGCTCGCAAATCCCAGCTGAGGCAACACTTGCTTATACACAcaggaaagaaatttttcacctGTGATATTTGTGGCAAAGGTTTCAGTCAAAAGCCCGGGTTAATTTGTCATCGGAAAATACATCCGGGAAATCATCCTCCTTTGCCAGTCATGCCGATTGGAGATCTGGTTAAAGAATTCACAGAAGAACATAGTATTGTAGCTAACGAAAATGTTCAAGAATTAGAAGATGATCCAGATTTTATGGATGGGGTCGAAGTTCTTGAGGAAAATGAGATTCTGGAAGGAAAAGAGGGTCTTCAAGATGAAGAGATTCTTCAAGGCGAAGAAATTATTGAGGGAGAAGAAATTCTTGAGgatcaagaatttttaaacggTCAGGAAGTCTTTTATGAACAAGTGATTCATGTGGATCAACAGTTTGAAGGCGAGCAAAAGTATCACGTCGATCAACAATTTCTTGATTCAGAGTTTAATGGTGATCTCGAAATaaAGAGTGAAATACTCTACATCAAGATCGAACCTGGATCCATTCTGCTGCCTGTAAAACGAAGGATCAGTAAGCCTCTAGAGACTAATAACaacaatacaaaaaatatcaacaatcCATCCAAAAATGATAATGAAATAGACAAAATAATTCATGATCTCGAGAAATACATCTGCGATTTTTGCAATGTGAGTTTCAATTCGAAACGAGATCTCGCTCTACACATCACGCAAAGTAAACTCTCATGTGAAATCTGCAATCATCACTTTCAGTACATGCATCAATTAAAACATCATTATACTTCGAAACATGGATCAGAGACGTTCCCGTGTTCGATGTGCAACTATGTAAGCAAATCTGTGTCTACGTTacaatatcattttattaggAAACACATGGATGGAAGTTATTATTACTGTGAACTCTGTTCGAAACAATTCAAGCTTAAAAATGATCTCAATACTCATATGCAACGGGTTCACAGTGGAATTTCCTATACTTGTGAGATATGTGGTCACCAAAGTAACAGTCTTCACGCCCTGAAAAGCCACATGAAATTTGTTCATCATAAACCTCCGTACCAATGTAAACTTTGCCACCGTTGTATGACTTCTCAAGAGAATCTTGATCAACATATAATCTGGCATCAAACAAGAGCACTACATGAATGTACGACTTGTGGAAAACAGTTTAAACAAAAGCAAATTTTAGTTAAACACATGCAAATTCATACTGGAGAGAGACCATATGAATGTGTTGTTTGTAATAATACTTTTTCCAGACATACTGCATATGAGCAACATGTACTGACTCACATGAATAGAAAAATGTACTCGTGTACCGTTTgtggaaaagattttacgCAAAAGTCGGGACTTATTTTTCACAGAAAGAAACATACTGGTCCTCTTCCACCATTACCTGTTGTTTCTGTTCGAAAAGTAGTCGaggaatttattgataaatttttaagtacaaGACAAATACCAGGAGACCCTTTATTTATTCCTCGGCCTAATTGCAAAGCAGCTAACGAATTTCCAATTAGTGTCTCATCGATTAAATCAGAAAGCCCAAGTGAACCGATTCCAAATAACGTGAAAGGGCCGCCTCGTCCATTATATTTATGTGAGCACTGTGAGTTCACGAATTCTGACAAAGAGATTACAGGAGATCACATCAAACAATCTCATGATCTCAAGCAAGATTATACTTGTAAATACTGTAACAAATGGTATAAATCTTACGATCTTTTGAGAGAGCACATAAAACGAGTTCATAGAAAATTACCATACATTTGTGGTGCATGTGATTTTAAAGCCATGGAATATGGAAATTCTCGTGTTATGTGGTTCCACATGAGGGCTAGACACGTAAACATCACTGGTGAAAATAATACTCCCTtaacttgtaaaatttgtgGATTTAAAAACACCAGTCATGGCATGTGGGATCATATGGAAAATAATCACATGAAAACTTATCATTATTGTGGAATTTGCAAGTATTACTTTAGCTCGCAATTAAAACTTCGATTGCATAAAACCGAGAAACATTCTAAGAAGTCTCGAAAGAAAGTCAATAAATTCATATCAATTGCACCTAAAATAGCTGGCCTTGAATATCCTCCCACGCCTCCATTGCATCCAATTATACCAATTATTAGTCGTCCGATAATATCTGCGACTCCTCCTATTCCATTTACATTTCCCTCAACAGAAAGTAcctgtaaaaaatatagtcgttttttaaaaaatcgagtATGCCTCGTTTGTGGCGTTGGCTATGATGTAGATTCTAAGTTACATCAGCACCTGCAAAAGTTGCAAAAAGATGTCGATGCTAGTGTGGCTCCAAAGTACATTAATGTCTCATTGGAAACACCAAGATATATTGTTAGGCAAAATAATGATAAGTTTGAAATTGTCCTTGATAACAAAATGGAAACAGTTCTATTTTGTTTTAGTTTCACGATTGCCTGCACTTGGACAATTGGAAAGCCTTCTGATGAAAGTATCGAGTTTAATATCGAATGTAAGGAAGAACGGCTAGATAGAGAAAGTGAAGACGAAGATAAACTAATGGAAGAGGCAAATTTGGTCAACCCTGTATTAGATCAAGGAAACAATTCCTTGAAGATTGAAGAAAACAATTCCTTGGAGATTGAAGAAAACAATTTGAACATGtacgaaaaaaatcaaattgcgTTCTACAATTCCACTGATAACTCACAAAATGAGAGCACTTCGATCGCTGATTGTCCACCTCTTCCTCTTGAATGTGTTTTAGTTGATGAGaagcaaacaatttttccgTGTGAACTGTGtgaaaaggtttttaaatataaaagaggTGTGCGGGAACATACCAAACGTTGTCACACTCAAGCTGAAACTGTAGAATGTTACATTTGCGGAGCTAAATGcagcaatttttatttggcTCGTCATATAAAAAATCGGCACACGGAACCTACCTTTGAGTGCAAAAAGTGTGGCAAAAGCTTcgacaaaaaagaaaaatttaatatccacAAGGGTACCAACTGCAAGAAATATGGTTTTAAGTGCAAAAAGTGTGgccaaattttcgaaaaaaaatatattcttgatGCCCACACACGTAGcacacacagaaaaaaatataaatgccTTTTCTGCAAGAAACCTTTTGCAGACACTGCGAAAGTAAGGTCTCATATGAGAATCTATCATGAGTTCAGACCTTTTCCTTGTCCTGCTTGTAATAGGCCTTTTACGACTAAACAAGCAATGAATCAACATTTACTTTTGCATACAGGAACACGTCCTTATGTTTGTGATATTTGTGGAGACACCTATATTCAGAAATCTAATCTCACCTTTCATAGGAGGAGCCATCGTGGACCACTTCCTCCGGTGCCACCTACATCTATAACTCAAATTGTGAAAAACTTTACTCAGATGTTGGAGTTTAAACATCGAAGAGAgggaaaagataaaaaggaaaaggatAATAAGAGGAAGATTCATGATGAAGGTCTAAGTTCAAAGAGAAGTGAAACAGAACAaattaagaaagaaatttaa
- Protein Sequence
- MDDNRGIFFFGKESVMMRKWQILEFDDKPYYAFIPENENPLEEDMITEYLETQEDKGTCDYVKRLAKPEPVSNVEVSDNCSNNEQEVDYNNEELESAETVEHIELENIKPIENDSNKENEGGDAFVYQMKVDGKMLTIEKHTENLLDSNSFEQEFGNEVENNIEYLENDEEELCNSFLQENESSVLKVNNLPKSPQESESLPSSVLKCKACSETFETNLAFRKHVAWTHKKRVCIQENGAYICSVCDYQTFKKNSFANHLERRHETWTTKIPNSLFFPCTACGFVCSSKHSLQSHFIRKHTDNFEHQCKFCEKQFKVKGDLTNHVRFHHKEKPISCDVCGKVCQNTGSLYVHQKWAHYKPKFECHLCHRRMVTQENLDQHLVMQHEKREKIVCAVCGKTFTKKDSFKRHMAVHTGKKPHSCPICPKNFARKSQLRQHLLIHTGKKFFTCDICGKGFSQKPGLICHRKIHPGNHPPLPVMPIGDLVKEFTEEHSIVANENVQELEDDPDFMDGVEVLEENEILEGKEGLQDEEILQGEEIIEGEEILEDQEFLNGQEVFYEQVIHVDQQFEGEQKYHVDQQFLDSEFNGDLEIKSEILYIKIEPGSILLPVKRRISKPLETNNNNTKNINNPSKNDNEIDKIIHDLEKYICDFCNVSFNSKRDLALHITQSKLSCEICNHHFQYMHQLKHHYTSKHGSETFPCSMCNYVSKSVSTLQYHFIRKHMDGSYYYCELCSKQFKLKNDLNTHMQRVHSGISYTCEICGHQSNSLHALKSHMKFVHHKPPYQCKLCHRCMTSQENLDQHIIWHQTRALHECTTCGKQFKQKQILVKHMQIHTGERPYECVVCNNTFSRHTAYEQHVLTHMNRKMYSCTVCGKDFTQKSGLIFHRKKHTGPLPPLPVVSVRKVVEEFIDKFLSTRQIPGDPLFIPRPNCKAANEFPISVSSIKSESPSEPIPNNVKGPPRPLYLCEHCEFTNSDKEITGDHIKQSHDLKQDYTCKYCNKWYKSYDLLREHIKRVHRKLPYICGACDFKAMEYGNSRVMWFHMRARHVNITGENNTPLTCKICGFKNTSHGMWDHMENNHMKTYHYCGICKYYFSSQLKLRLHKTEKHSKKSRKKVNKFISIAPKIAGLEYPPTPPLHPIIPIISRPIISATPPIPFTFPSTESTCKKYSRFLKNRVCLVCGVGYDVDSKLHQHLQKLQKDVDASVAPKYINVSLETPRYIVRQNNDKFEIVLDNKMETVLFCFSFTIACTWTIGKPSDESIEFNIECKEERLDRESEDEDKLMEEANLVNPVLDQGNNSLKIEENNSLEIEENNLNMYEKNQIAFYNSTDNSQNESTSIADCPPLPLECVLVDEKQTIFPCELCEKVFKYKRGVREHTKRCHTQAETVECYICGAKCSNFYLARHIKNRHTEPTFECKKCGKSFDKKEKFNIHKGTNCKKYGFKCKKCGQIFEKKYILDAHTRSTHRKKYKCLFCKKPFADTAKVRSHMRIYHEFRPFPCPACNRPFTTKQAMNQHLLLHTGTRPYVCDICGDTYIQKSNLTFHRRSHRGPLPPVPPTSITQIVKNFTQMLEFKHRREGKDKKEKDNKRKIHDEGLSSKRSETEQIKKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -