Sumb022981.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synergus umbraculus
Gene Symbol
-
Assembly
GCA_900474325.1
Location
UCOK01019974.1:29864-34548[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.026 2.9 9.0 1.8 1 23 432 454 432 454 0.97
2 18 0.077 8.8 7.5 1.6 2 23 512 533 511 533 0.94
3 18 0.00021 0.024 15.6 3.8 1 23 588 610 588 610 0.96
4 18 0.024 2.8 9.1 0.6 2 23 614 635 613 635 0.96
5 18 1.5e-06 0.00017 22.4 0.8 1 23 684 706 684 706 0.94
6 18 0.00061 0.07 14.1 0.8 1 21 712 732 712 736 0.92
7 18 0.00051 0.058 14.4 3.5 2 23 804 825 803 825 0.95
8 18 4.2e-05 0.0048 17.8 3.8 1 23 877 899 877 899 0.97
9 18 0.00056 0.064 14.3 1.1 1 20 904 923 904 925 0.94
10 18 0.049 5.6 8.2 0.3 2 23 936 957 936 957 0.97
11 18 3e-05 0.0034 18.3 0.6 2 23 996 1017 995 1017 0.97
12 18 2.7e-05 0.0031 18.4 1.6 1 23 1022 1044 1022 1044 0.95
13 18 0.00015 0.017 16.1 2.9 1 23 1050 1072 1050 1072 0.98
14 18 4.8e-06 0.00055 20.8 0.4 1 23 1088 1110 1088 1110 0.95
15 18 2.7e-07 3e-05 24.7 0.8 1 23 1116 1138 1116 1138 0.99
16 18 1.1e-05 0.0013 19.6 0.8 1 23 1144 1166 1144 1166 0.98
17 18 0.00079 0.091 13.8 4.2 1 23 1172 1194 1172 1194 0.96
18 18 0.011 1.3 10.2 0.4 1 20 1200 1219 1200 1221 0.89

Sequence Information

Coding Sequence
ATGGACGCCGTAGAGATAAATACGTCGGAGCCACCACAAAATGAGGAGGGAATTGTATCTGAAATGGAAATATGTCGTGTTTGCCTTCTTGGAAACGTTGTGATGAGAGACCTCTTCCACGAGAGCGAAGTGAACTCTCTATCTGTTAAAGCCATGAGCTTCGCCAGCGTTAAGATGGTGCCAGGCGACGGACTGCCAGGACAGGTTTGTTGCGTTTGTGCAGACAAACTGGAATCAGCATACGAGTTCAAATTGCAAGTTGAACAAGCCGACAGTGTTCTCAGAGAAAAATTTGATACACTTAACATTAAAGAAGAACTATTTTTCAACGATGTTGAAGTTCATTTGGAAGGAGAGAGAACTCGCACGAGGCGTGAAATAAATGACAATGGTGAATACGTGGAGACAACCGAATCATTGCATGATGATGGCAGAAACACACTTTTGAAGGATCATCTAGCTCTTCTACAAGTTCAAAAACTGTCAGAACAAGAAAGCATGTTACAAGAAgGTGTGGAACATTTACAAGAACATCTCCAAGAAGAATTGCAAGAGGAACACCTCCAGGAGGAGCATTTGCAAGAGGAGCACTTACAGGAGGAACAATTACAAGACGAACATTTGCAGGAGGAGCACCTTCATGAAGAACACTTACAAGAAGAGCACCTGCAGGAAGATCAATTGCATGAAGAAGAGGAAAATTTGCAAGAAGAGCATTTGCAGGAAGAGGATTTACAAGACGAACATTCACAAGAAGAAATCATGCAAAAAGATGATCTACAAGAAAACGATATTGTGAACATAAACAAAGAGTCGAATCAAGAACTCTTGCAATTAGAACATATTTCGCAAACCGTGCACCACTTTGCTGATCAGAGCAACGTTAAGGATGAAAGACTACATGAAACAGAATCTGTAAACATGCAACAGCAAAGTTATCTTGATCAACAGGATTGCACTCAGATGAGTGACGATGATTTCAACAATGATGAACCTTTCGCAGTTACTCAAGAGTCTATGGAATATTCTTCGTCCCCAGCTAAAGAAAGAGAAACCGAGCAAGAACAAGCCCAAGACCAATCTCAGCAATCTATAGAAGACACAACCACTGAGCAAATAAGTCTCATCTTGCAAGAAGAATCTCCTCAAAGTGAAACACGTAGAAGTAAACGCAAAATTGCGCGTCGCTCTACTGGTTCTGAGCACAACTCTGACGAAGagaattatttcgaaaatctaAACCTTAGTTCACGACTGAAGAAGACTCAGAAGGATAAATCAGAGAAAGTCTTTTTTATGTGTTATCTCTGTGACAAAGAATTCCTCTCTAAGGGAGTTTTGAAAGAACACATGCACTCTCACGAGGAAGTGAGAAGGACCCTTTCCTTGAAAAAGATGGAAGACAAGCCTCAAAAGATAGCGACACCTCAAAAAACAGCATCACCACAGAAACTATCCTCTACATCGAAAATCTCTACTCCTCAGAAATCTGCTACTCCTTTCAAAACGCCACCATCGGGAAAGAAACTGAATAAATGTCCTCATTGCGGAAAAGAGTACCTCTACATAATCTCATATAATAAGCATTTGAAACAACATGAAAAAGAAACCGGTATAGTGAAGAGCGAGTCAATGGTGGAAGTTTACTTCCGTGAGGATGACGATTCTGATGACTTTCATGGATATGCAAACTCTCCCGGTGCCGACCACGCTACTACTGGAAATTATTCAGATTCAGATGAGCTTGGGAAGGAAGAAGTTCATCAATGCAACAAATGTCCAGAGAAGTTTAATACAAAACGAGCACTTCGAAAACATTCTATTAAACACACACATTTGAAGTGTTCCGTTTGTGAGGAACAATTCGATTCTCTGGAAAAGATGAAGGAGCACCGAATTAAACACGTGGAAGAAGGGGTTTTAACCgaagaagatttaaagaagGAATTTGAGAACTTGAAAGATCTTTTAGAAGATGTGGAGGAAGATGAAGAAACAGCAGATACAAAGTttctttcgaaaaattccgAGACTAATACAGGCAACAAGTATAGTTGTAAAATTTGTGGACAAGAGTTTTCGAGAAAGGATCAATTACAAAAACACGCGGATCAGCACGAGAAAGTAAAGTCCTTCAAGTGCACTCAGTGTAATAAAACCTTCGGTAACGAACTCACGTTACGTAATCATTTGATAGCAACTAATCACAAAACGATTATGCATGGGCAAGAATACGACCCGAACAAGAGAATTAAACGAGTTGCGGCAAAGGCTGCCCAGAAGATTAtcgacaaaattaaaattgaaaatgagagTGATTACGAGGAGGatgataaaagtaaaaacgACAGCAATTACAGGGAGGAATCGAAAACTCCAGGTAAAAGGACTTACAATAAAAAGGTTCTGGAATGTGCGacctgtaataaaaaatgcagCTCTAAGCAATCCTTAACAAAACACATGGAACAGCACGTCAAGGATGAAAAAGGAGATAAAGATAAGATAGATAAGGTAAAATCAGAGAGGTCAACGAAACAAGATACTAACAGAACACTAGATGACGATAATGACGACGATGATCTCGATGATGATTTCGAAAGTGGTCTGGATTGGCCGATGGACATTCACGAGTGTCCCACCTGTAAAAAGAGATACAGTACCAAGAAATCTTTATTAAGACATCAACTTTTACACGAGGAGCCAAACTTTGAATGTGACATTTGCAACGTTAAATTCTACCGCAAAGATAAACTTAAATCCCACTACGACAAATGTTCAGAGAAAAATCCCGATCAGGTGCGAAAATGCAACATCTGCGGGGACAGTTTCGAAAATAATGAGATTCTCCGTGAGCACCGAGCAAAGCACGTGACTGAAGGTATTTTGACGGAGGAGGATCTGAGGGAAATCGAGCCTAGGCCCGAGGAAAGAAAATCAGGAGAGAAAGTCGCAAGGAAGAGAAGAACAGATATTGTAGGTCTCGAGTGTACAGAATGCAATAAACAATATACTTCTAGAAAGGGACTTTTGCGACATATCCAAGTTCACGAAGGAAAGAAATACCTCTGCGATATCTGTCCAAAGAAGTTCTACAGAAGAGAACATCTGAAGATTCACGTAGCGAAACACAACATGCTCAAGCCTTATAAATGTACGCGTTGTACAAAGCGTTTTATTAAAGAAGAACAACTAACAAACCACCTTTCGAAACACGACAGGACCTTCAAAAAGAACAAGGAAACTGACAGTTCAAAGAGATTCCTCTGCGAAATATGCTCGAAGAGCTTTACTCAATCAACGACCTTGATTGCTCATCTCAGAGCGCACAACGGAATAAAGCCTTACGTTTGCAAAGTTTGCGAGAGACCTTTTACCACAAATGCTTATCTCAAGATGCATATGAGAACTCACACGCAGGAGCGACCTTATGTTTGCCACTACTGTTCAAGGGCTTTCGCCAGAGCTGACACCTTGGCTAATCATCTGACTTCTCATACTGGAGAGGCCAAGTATCACTGCAAGTTCTGCCCGAAGAACTTCAGAAGATTGAAGTCGTTGAAGGAACATGTTTTTATCCACACGGGACAGAGACCTTATGCTTGTCCCACTTGTGATCGCAGGTTCAACAATAATGGAAGTAGATACGCACATAGTAAAAGGTGCAAACAAAACATGCTGCAAAATCAGAACCGCCTTCAAGTCGTAGCACCAGAAATGCAACCGAGATTACATCAAGCCCTCACCCAGCCGCCTATGTTAAAAGCACAGAATATCAAGACGATAACGATTGCTAGACAGGACCCTCTGACAGCTCAACAGGTTCTCCAACATCAGGAACTTCTGGTGCCACTTATTTTACCCCTGACAGTGACCCTCGCCGATGTAGGAGAAGAAGTTATTTTACCGGAAGGTACCAAGCTCTTCACCACGTCTTAA
Protein Sequence
MDAVEINTSEPPQNEEGIVSEMEICRVCLLGNVVMRDLFHESEVNSLSVKAMSFASVKMVPGDGLPGQVCCVCADKLESAYEFKLQVEQADSVLREKFDTLNIKEELFFNDVEVHLEGERTRTRREINDNGEYVETTESLHDDGRNTLLKDHLALLQVQKLSEQESMLQEGVEHLQEHLQEELQEEHLQEEHLQEEHLQEEQLQDEHLQEEHLHEEHLQEEHLQEDQLHEEEENLQEEHLQEEDLQDEHSQEEIMQKDDLQENDIVNINKESNQELLQLEHISQTVHHFADQSNVKDERLHETESVNMQQQSYLDQQDCTQMSDDDFNNDEPFAVTQESMEYSSSPAKERETEQEQAQDQSQQSIEDTTTEQISLILQEESPQSETRRSKRKIARRSTGSEHNSDEENYFENLNLSSRLKKTQKDKSEKVFFMCYLCDKEFLSKGVLKEHMHSHEEVRRTLSLKKMEDKPQKIATPQKTASPQKLSSTSKISTPQKSATPFKTPPSGKKLNKCPHCGKEYLYIISYNKHLKQHEKETGIVKSESMVEVYFREDDDSDDFHGYANSPGADHATTGNYSDSDELGKEEVHQCNKCPEKFNTKRALRKHSIKHTHLKCSVCEEQFDSLEKMKEHRIKHVEEGVLTEEDLKKEFENLKDLLEDVEEDEETADTKFLSKNSETNTGNKYSCKICGQEFSRKDQLQKHADQHEKVKSFKCTQCNKTFGNELTLRNHLIATNHKTIMHGQEYDPNKRIKRVAAKAAQKIIDKIKIENESDYEEDDKSKNDSNYREESKTPGKRTYNKKVLECATCNKKCSSKQSLTKHMEQHVKDEKGDKDKIDKVKSERSTKQDTNRTLDDDNDDDDLDDDFESGLDWPMDIHECPTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKSHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLREIEPRPEERKSGEKVARKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMLKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCKVCERPFTTNAYLKMHMRTHTQERPYVCHYCSRAFARADTLANHLTSHTGEAKYHCKFCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNMLQNQNRLQVVAPEMQPRLHQALTQPPMLKAQNIKTITIARQDPLTAQQVLQHQELLVPLILPLTVTLADVGEEVILPEGTKLFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00980354;
90% Identity
iTF_01393725;
80% Identity
-