Sumb001075.1
Basic Information
- Insect
- Synergus umbraculus
- Gene Symbol
- -
- Assembly
- GCA_900474325.1
- Location
- UCOK01006528.1:33127-36480[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.5e-05 0.0052 17.7 5.6 1 23 325 347 325 347 0.98 2 15 3.4e-05 0.0039 18.1 2.7 2 23 353 375 352 375 0.96 3 15 7.2e-06 0.00082 20.2 1.0 2 23 446 467 445 467 0.97 4 15 5.9e-05 0.0067 17.3 2.2 1 23 473 495 473 495 0.96 5 15 0.00049 0.056 14.5 0.1 2 23 502 523 501 523 0.97 6 15 3.4e-07 3.9e-05 24.4 0.9 1 23 541 563 541 563 0.98 7 15 5.5e-07 6.3e-05 23.7 1.2 1 23 569 591 569 591 0.98 8 15 1.2e-05 0.0014 19.5 1.6 1 23 597 619 597 619 0.97 9 15 0.00082 0.094 13.8 0.2 1 23 625 647 625 647 0.99 10 15 0.00016 0.019 15.9 0.2 3 23 655 676 653 676 0.92 11 15 6.3e-05 0.0073 17.2 1.5 1 23 682 704 682 704 0.98 12 15 0.0004 0.046 14.7 4.7 1 23 710 732 710 732 0.98 13 15 4.1e-06 0.00047 21.0 0.2 1 23 738 761 738 761 0.96 14 15 1.5e-05 0.0017 19.3 2.1 3 23 769 789 767 789 0.95 15 15 3.5e-06 0.0004 21.2 5.1 1 23 795 817 795 817 0.99
Sequence Information
- Coding Sequence
- ATGAATGCTGAATTGTTAAATCCGGCAATTACACTTTCTTGTGCACTGAATGACATGTCAAATGTCAATTCGCAATTTTTTTCGGTTAGACAAGAAAATGACGATGAAACAGCAAACTCGATAAAGGAGtcTTTCTCGCAACTAGAGAATGAAACGGATGCGCTAAGAGTAATTGATCCTCTTGCAAAAAATCCGTCTGAAAGTGAAAATAGAGGGCAAATTGATGTGATAGACATGCAGACGGAAGATACATCGccttacaaatatttatttgtctATGAAGACAGAACATCAAGATATGTTGTACTTAAAGCCATGAAAAGTAATGACTTCAAAAAAATAGCAATGCAACTTCTAGAAGTGTTAACAATCATCGGCATTCCTCGTATTTTACAATCTGGAAATGGTcgaaattttactgaaaaagtCGTTCAGGAATTGCGTCCATTTTGGGACGGATTAAGTATAATTACAGCAGacgttctaaaattttcttcgagtgaaagaaattttaaaagtattattaaatCCTGGATGAAAAAGCACACAAACAAAACGTGGTTTGAAAGTATTAAGTTTGTTCAGGTTTTACAAAACGCAACCTTTCTTTCCAAGGATGGAAAGTTTCCTTACGAATGTCTTTTTCATAGAAACGTCTATGAGAATTTTCCTTTGAATTGTAacgagaaaagaaattttgattgtgATGAgtttaaagtagaaaataaaGATCATGATGATACTTCTTCTATTTCTGATGACGATAATCATGAAGATCATAATCACGACGATAGTGAAATTagtgaagaaatatttcacaaaGAAACTGGTCAAAATAAATCTTCTGTAATTTCTccaaaaactttcaaaactttgaacttttttaccataaaaaatgaagaagttCCTGCTGAAGATTCGACTTCAGAAAGCGGAGAAACTTCgcctataaaattaaaagaaaaaaaacctcACAAATGTAAAATCTGCCCCAAGAAATACACAAAATTAGGACACTTAACGAATCATCTAAAATCGCACAAAGCGAGTAATTTAGAGTGCacaaaatgttcaaaaaaattccgTACTCAGACTCTTTATGAGAATCACATGAATAAGTCTCATAAGGAACAATCTGAAAATCGCAATAGTAAATATGGCACAGAAATTGAAGATTCTAATCAAAAAGAGAATCCTGCAAGTACTCGTAACAATTCGCTAGTGAAAGAATCCAAGGAAATGTCTTCCGAGAAGGTTTCAAAATCTAAACAACCGACTcttcgaaaaaaatcaaacCTCCGGGAAAAGCGGCTCAAGTTAAACGGAACCTTGTTAAAATGTAGCTACTGCGAccaaaaattcgaatttccGAGTGTTTTGAAAAGACACATTCGTTCGCATACGAACGAGAGACCCTACGTTTGTAGAGTTTGCAACAAAAGCTTCAAGCAGCTCGGACATCTTAGCCAGCATTCTGTAACTCACACAGATTACAGATCTCTTCAATGTGGTCAATGTGGTGTCAAATTTGAGTCACTAGATGCTCTCAAGATTCATTCTCAGACCCACCCGACTGAATCGAATCCAAAGTTAAACCCTAATCTTCCAACGACTCGTCTTTTTGAATGCGACATCtgtaaaaaagtatttaccACTAAAAGCGTTTTGGAGAGGCATATCTTCACTCATACACACGAAAGAAACTTTGAATGCGAAGTGTGCGGAAAACGATTCAAGCAATCAGGTCACGTGAAATCTCATATGCTCGTTCACACAGGAGAACGAAAATTCTCCTGCACTATCTGTTCAAAACGTTTTAGTTTGgcaaattctttaaagaaaCATATGTACATTCACAATGGAGACAAACCCTACCAATGTGATGTTTGTGGTGCAAGATTTCTAGAGAAAAGAAATCTGAATGGACATCTAATGACCCACACGAATGAAAAACCATTTGGCTGCAAAATCTGTGGGAAAAGATATACTTTGGCTGATACTTTAAGACGTCACGTGAGTGCTGCTCACGAAGATGGAAGAACATATCAATGTGAACTATGTGCGAAGATGTTTAAGCAACTGGCACATTTATCAGTTCATAAAAAAGTTCATAATGATGAGAGACCTTTCCAATGTCACCTTTGCGAGAAGAACTTTAAGCATAAGAATGTTTTAAAGTCTCATTTGGCAATTCATGCAAATGTTAGGCCTTTTGAATGCGATGAATGTAAAGCTACTTTTGTCAGAAAGACGAATTTGCAGACTCATATTGCTTCAGCGCATATGAATGAGAGACCTCACCTCTGTACTATTTGTGGGAAAAAGTTCAAACAAGTCAGTCATCTGAATGGGCACATTATTGTTCACAGCAATTCTATGCCTTATCAGTGTAATTTCTGTGATCGGAGGTGTAACAGGTTGGATAATCTGAAAAAACATATGCGACTTCACATGAAAGTAAATACAAGTGATACATATGTTAAAAAGGTCGAGGAAAATATCGTTAGGACTGAAATTATTCCGATGATTCGTAAAGAAGTTCCAGCTGAAGGCTTCCATAATTTTCACAGAAAGatttaa
- Protein Sequence
- MNAELLNPAITLSCALNDMSNVNSQFFSVRQENDDETANSIKESFSQLENETDALRVIDPLAKNPSESENRGQIDVIDMQTEDTSPYKYLFVYEDRTSRYVVLKAMKSNDFKKIAMQLLEVLTIIGIPRILQSGNGRNFTEKVVQELRPFWDGLSIITADVLKFSSSERNFKSIIKSWMKKHTNKTWFESIKFVQVLQNATFLSKDGKFPYECLFHRNVYENFPLNCNEKRNFDCDEFKVENKDHDDTSSISDDDNHEDHNHDDSEISEEIFHKETGQNKSSVISPKTFKTLNFFTIKNEEVPAEDSTSESGETSPIKLKEKKPHKCKICPKKYTKLGHLTNHLKSHKASNLECTKCSKKFRTQTLYENHMNKSHKEQSENRNSKYGTEIEDSNQKENPASTRNNSLVKESKEMSSEKVSKSKQPTLRKKSNLREKRLKLNGTLLKCSYCDQKFEFPSVLKRHIRSHTNERPYVCRVCNKSFKQLGHLSQHSVTHTDYRSLQCGQCGVKFESLDALKIHSQTHPTESNPKLNPNLPTTRLFECDICKKVFTTKSVLERHIFTHTHERNFECEVCGKRFKQSGHVKSHMLVHTGERKFSCTICSKRFSLANSLKKHMYIHNGDKPYQCDVCGARFLEKRNLNGHLMTHTNEKPFGCKICGKRYTLADTLRRHVSAAHEDGRTYQCELCAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDECKATFVRKTNLQTHIASAHMNERPHLCTICGKKFKQVSHLNGHIIVHSNSMPYQCNFCDRRCNRLDNLKKHMRLHMKVNTSDTYVKKVEENIVRTEIIPMIRKEVPAEGFHNFHRKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392197;
- 90% Identity
- iTF_01390521;
- 80% Identity
- -