Sumb018079.1
Basic Information
- Insect
- Synergus umbraculus
- Gene Symbol
- -
- Assembly
- GCA_900474325.1
- Location
- UCOK01019721.1:245-2586[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-07 0.00013 22.1 0.0 5 38 51 83 40 87 0.93 2 2 1.9 1.7e+03 -0.6 0.1 16 24 216 224 216 225 0.87
Sequence Information
- Coding Sequence
- ATGGTCAAAACTACAAAAAAGGGATCTGAAAATACgtcaaagaagaagaaagagcAAGAtgtgaaatttaagaaaactaattcaaagaagaaaagtaacaccaataaaatgaaaaagaaaagaatagagaGGAATTATAGTGTGCAGTCGATCAAAGAAGCTTTGAACGCAGTTGACAAGGAGAAGTCTTATCGTGAAGCAGAAGACAGCTTCGGAGTTCCCAAAAGCACGTTGTACAGGTTCAAGAAGAGTGATAAACCATTCCTAAACTCCAAAAAAGGTGCTCCGACAGTACTCACTGCAACTGAAGAAGACTTTGTCGCGTGGATTCTCTATCGTGCTGAAAGGGGTTTCCCTGTTAATATAAAACTGTTGTTGGATACAGTTAAAGATTATGTTTTGAGTACAGGAAGGGATAATCCTTTTAACAATACTCGACCAGGATACAAATGGTATCGACTGTTCATGAAGCGGCATAGCAACTTGAGTATCCGTTCTGCTCAAAACCTTACTACTACTCGGGCATCTGTATCAGAGAGTGATTTACGTCAGTGGTTTACTAAGTTGAAGACATATCTAGAGGACAAAGATCTTTTGAACTTAGATCCAAAAAGGATATTCAATTTGGATGAATCATCCTTTACCCAGATAACAATGCGTAAAGCCGCAAGAGATTGCCCTTACTTTGAAGGACCACaaagtaaaaatgcttacaaGGAGGAGATGAAAGAAGTTTTCAGATCGGCAAAACAAAGATATcgattatctttaaaaaagttaaacgCAGGAGATAGAATTGTGTCTGAAGAGGATGAAGAGGAGATGCAGCACtcagaaaataattcattaacaGAACTAGAGATTAGGAACAAATTGGCCCTACTAAATAGTTTAACTAATGAGTCAGAAAGTGAGGATTATTTGGGTGATGGTTCTGAGGGAGGTGAAGAATTCTAA
- Protein Sequence
- MVKTTKKGSENTSKKKKEQDVKFKKTNSKKKSNTNKMKKKRIERNYSVQSIKEALNAVDKEKSYREAEDSFGVPKSTLYRFKKSDKPFLNSKKGAPTVLTATEEDFVAWILYRAERGFPVNIKLLLDTVKDYVLSTGRDNPFNNTRPGYKWYRLFMKRHSNLSIRSAQNLTTTRASVSESDLRQWFTKLKTYLEDKDLLNLDPKRIFNLDESSFTQITMRKAARDCPYFEGPQSKNAYKEEMKEVFRSAKQRYRLSLKKLNAGDRIVSEEDEEEMQHSENNSLTELEIRNKLALLNSLTNESESEDYLGDGSEGGEEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -