Sumb013607.1
Basic Information
- Insect
- Synergus umbraculus
- Gene Symbol
- bab1
- Assembly
- GCA_900474325.1
- Location
- UCOK01017880.1:25504-27849[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-08 1.4e-05 25.2 0.0 4 45 306 347 303 347 0.94
Sequence Information
- Coding Sequence
- ATGGCTGACTCGTCAATGCAATATCACTTACTGTGGAAGAATCACCTCTCAAATATTCTTACAGAATTTTGGCTTCTATTTAAAACTCAGAAGTTCACAGATGTTACTCTGTGGCTAGATggaaagaaaagtgtgaaatGCCATAAAATAATACTCGTGGCGAACTCtagttttttggaaaatattttagcaGCCACGTCCGACGAAGAACATTCTCACATCACCCTACTACATCTGACGATTTCTGATATCATGCCTATTTTAGAATATATGTACCGTGGGGAAGTCAATGTGCctgaaaataaacttaaaaatatgcTTACGCTGGCAAATGACTTGAagGTGAAAGGTCTGatgaattcttcaaattttgaaaattatggaGAAAAAATTGATGCTGCGATTTCGCCTCCACAGACCAACACAACCAGCACAACGAATAAAGTACAACAAAGCAGCGAGCAGATTTCGATTCCACACTCCACTGGTGGTTCCTATCAGGTCAATGGAAATTCTGAACTGGAGGATCCAACCGAACAATCTTCATCCGATTCTATCTGGAAATATGTCGGACATTACTTGGATCCTGAATTCAACTACGGAAGTGCAAAAACGCCGAGAAAAGAGGAGCTAATGAATGAGGAGTTGGTCCAAGACATATCTGAGAATGCTGAGAATGCACTTAGTCGACGATCCAATAGTTGTGAACAACTCAATGGCATCCACAGTGACGAATCTTTATCGAATGGACGTGGCAGACGTACTGTTGATGATTTGGGAAATCCTCATGGAGTTAGACAAGAAGACGAAAGCGATTATTCATGCGGTACAAGTCAATCTACGCGTCAAGGTTGCATAAGAAACGATTCCATGCCAAAAGCGGAATGGAGACGCTACAAACAATATTCCACCGCAGATCTTCATCTGGCTTTGGAAGCAGTGAAGATGGGCCTGTCTCCCTGCGCAGCAGCAAGACAGTACAAAGTACCGTCTAGAACTATCTACGATAGAGCTAAAAAGTTGCGAATAGATATGAAACGGATAAAGAGAGACCGTGCTTTACAGAAAATCAACTGCGATAGGATTGAAGATTCCAACGATATAGGTCAGGACAGTTAGACCTGGGTCAACCAGTATTAA
- Protein Sequence
- MADSSMQYHLLWKNHLSNILTEFWLLFKTQKFTDVTLWLDGKKSVKCHKIILVANSSFLENILAATSDEEHSHITLLHLTISDIMPILEYMYRGEVNVPENKLKNMLTLANDLKVKGLMNSSNFENYGEKIDAAISPPQTNTTSTTNKVQQSSEQISIPHSTGGSYQVNGNSELEDPTEQSSSDSIWKYVGHYLDPEFNYGSAKTPRKEELMNEELVQDISENAENALSRRSNSCEQLNGIHSDESLSNGRGRRTVDDLGNPHGVRQEDESDYSCGTSQSTRQGCIRNDSMPKAEWRRYKQYSTADLHLALEAVKMGLSPCAAARQYKVPSRTIYDRAKKLRIDMKRIKRDRALQKINCDRIEDSNDIGQDS*TWVNQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01391890;
- 90% Identity
- iTF_01391890;
- 80% Identity
- iTF_01394497;