Sumb023394.1
Basic Information
- Insect
- Synergus umbraculus
- Gene Symbol
- -
- Assembly
- GCA_900474325.1
- Location
- UCOK01001600.1:22112-22570[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.2e-08 3.7e-05 23.9 0.0 1 39 15 53 15 55 0.90 2 3 3.6 3.2e+03 -1.5 0.0 9 19 56 66 56 66 0.83 3 3 6.3 5.5e+03 -2.3 0.0 21 26 94 99 92 99 0.87
Sequence Information
- Coding Sequence
- ATGGtccgaaattataaaaagaaaaccaGCCGCGGGGAAGGCACTCCTCAAGACTTCCTGGCGGCGGTAAGGTGCGTGAGGATCAAGGGACACTCCATTAGGAAAGCTGCACTGGAATCGGGTCTCAACTATAAGACTCTACAAAgatatgtaaagaaaatagaCGTTGAGGAAGTTCTCAATGGTGAATTAACTGTTCCATCCTGCCAAGTTGGTTATAAACCAACACGTTTGGTTTTTTTACATGCAGAGGAAAGCCAACTTGAAACGTACATTCTCCAAGCCGCTGATATCTATTTTGGGCTGTCACCAAGTGAGATACGACGTCTTGCATATGATGTCGCTTTGGCAAATGGAAAAGATATTCCCCAAAGTTGGATGGCAGGACATAAAGCTGGAGAAGATTGGTTCTCCTGCTTCATGAAGCGACATCCGAGGCTCTCTATTCGAACGCCTTAA
- Protein Sequence
- MVRNYKKKTSRGEGTPQDFLAAVRCVRIKGHSIRKAALESGLNYKTLQRYVKKIDVEEVLNGELTVPSCQVGYKPTRLVFLHAEESQLETYILQAADIYFGLSPSEIRRLAYDVALANGKDIPQSWMAGHKAGEDWFSCFMKRHPRLSIRTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -