Smag016043.1
Basic Information
- Insect
- Synergus magnus
- Gene Symbol
- -
- Assembly
- GCA_032275165.1
- Location
- JAUESH010000043.1:18608607-18612992[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00023 0.03 15.5 0.6 2 23 117 139 116 139 0.95 2 12 0.074 9.7 7.7 2.7 1 23 145 168 145 168 0.96 3 12 6.1 8e+02 1.6 0.9 1 13 385 397 385 403 0.84 4 12 1.6 2.2e+02 3.4 3.2 3 23 535 556 533 556 0.91 5 12 0.0018 0.24 12.7 5.4 1 23 562 584 562 584 0.99 6 12 0.018 2.3 9.6 2.2 1 23 827 850 827 850 0.91 7 12 5.2 6.9e+02 1.8 0.5 2 20 923 941 923 945 0.79 8 12 0.54 71 4.9 0.6 1 22 952 973 952 973 0.92 9 12 0.025 3.3 9.1 0.4 1 23 978 1001 978 1001 0.88 10 12 0.0075 0.98 10.8 7.7 1 23 1008 1031 1008 1031 0.96 11 12 0.00029 0.038 15.2 0.2 2 23 1113 1135 1112 1135 0.95 12 12 0.0071 0.93 10.9 0.1 3 23 1241 1262 1240 1262 0.91
Sequence Information
- Coding Sequence
- ATGAAGAAAAACTCCAAGTATATTAATCATGCAAAAGAAGACAATGAAAAAGCTTTGGAAAAGGTAAGTCTTCCAACGAGAAAGCTTCTAAGTTCTCTAGAAGACAATCCCAaagttttatttgttaaattaaacttCATTGGGAAAAACTCTTCTGAAAATGGATCAGCTTATAAAACCAGAAATAAGTCTGTTAAGGTTTTGTCGTCAAGTGAAGTAGAGAAAAAAGCAATTCAAGACGTAGAGTTGATGTACAAGACAGTACAAAAAATGATATCCTCTTCAGGAAAATTGATTACCTCTGAAATAATACCTAGTGAGACTatcaatgttaaaaataacttagttagttgtaaaaattgtaaggtCACATTTTCAAGAAAGATAGAATTAATTAACCACATTTCGAGCAATCATCCAGAAATTTCATTGCATAGTTGCAATTTCTGtgataaaaagtttcttatgCTCCGTGGTCTCAATCAACATATGATTAAGAGTCacgcaataaataaaaaagagattaagAGCAAGAATTCGAAGGAAACGATCACAAGTCCCTTCAAGACTCATTTGGATGGAAAGGAGATAATAAATGACGATTGGACATATTCTGCTTATCTAACGGATCTAAACAATAGTCTTCCGGTTGACAATATTAGTCAAGAGGAGGCAAATGCTGATTTAAATGAAAGTTCTCTTAACTCCAACCCGTCAATTTATTCACTAACAAACTCTAGTAATTCAACCGATTCATTTCAAAGAGGCACAAACATCGATTCCGCTAGTTTATCTTTAAATGGGAGGAAAAAATTCGATGTTCCTGTGATAAGCTCAATGCACATGAAAAATCAGCGTTCAGTTAACAAAGAAGAAGACTCGAAATTTCGAGTAAATGCAATTCTACCGCCGGATCACGAGAAAGTTCCGTTTAAACCTGAAAGTGATTTCGTCTTCTCATCGAACAACAACTTGGAACTTGAAGATGAAAGTCAGAAAAGAGTATCATTTAACAAATATGAAGAGCAAGAAATGATGCCTTCGAGTAGTCAAAACGAAGTCTTATCTCTAAAAATATGCTGCTCATGTCTAGAGATAATGCATGTAATGAAGAAGATATTCGTCAAGCAAGAGTACTCGAAATTCAAGAGTCATAAGTGCCCATTTTGTGGGGTGTATTACGCGgacaattattttgaacatcACGTTGCGGAGGCTCACATTATATGCAATGAAGAAGAATGCAGATCCCGATTTATTCTAACCGAATGTCAGTCCCGGAAACTTTTTATGCAAATCAAAATGGAGTGCATACACTTTAATTGCAAACATAATTCgcataaaaacaaattaaaacatCAAGAGTGCGACACAACGAACAAGATAGAAAGTGATCAAGTCAAAGTGTTTTCTATCAAAGTTGAACCATCTATAAAGCaagaaaattctttggaaaataGTGAGTCCTTACTTCTCGATAACGGAAGTTCTAACACGGAAGAAAATAGAGTATCCTCGAGTAATTGTTGTATTTATGAAACAtcagaaaaatgtttcgatGAATCGGAAGCTAAAGTAGAATCGTCCGAGCCTAGTTTATTCtgttatttttgtaaagaaaCTTTTCATCAAGAACAGAAACTATTGTCACATTTATACAATTATCACCGATTCACGCATCCGTTTACTTGCCACATCTGTTTTTTATGCTATAGATTCATCAAAGAGTTGCAAGCTCATATGCAGACGCacgaaagagaaattttggaGGAAAAACCGTCGCTTAGCGTCAAAGAAAACGGACTAAAACACGAGAAGGAAGAACCTTTGGATGAATCCACTCAACATCCTCAATATCTAGAATCCAAGGCACAAGATCTTCAGTATTTGGAATCCGAGCCGCAAAATCTTCAGTGTCTAGAATCCGAAGTAGATTTTCAATTGGAATCGGAAGTACAAGATCTTCAATTGGAATCAGAAGTACAAGATCTTCAATTAGAATCCAACCTAAGGCAAGATTTTCACGTACCCGAAGAACTGAACTTTCTGGAATTCAATGCGAAGGATTCTCTTGAAGAATCGAATAAATCCATTTCAGATGCATCTACTATTGATTATAATCCCGCGGAAGTAAAAGTCCCATACGATGATGCAGTTATTAAACATGAAGAGAAGGATTCTCCGAAGAAGAAGAGGCCCAAAATTTCATGTGtggtagaaaaagtagaatatCCTCTCGATATTCATAACTTGTATGCTTTTATTCGAAAAACGGAAGAAACTACTCCGGAAGTAAAGACTGTGGAGGTAGAAATTCAGAATCCCTCGACAGAATCTAAGGATTTACTCTCCCTTGAAGCGAATGCAGATTTAAATACATCTCCAAAAAAGACTCAAGTTAAGAGAATGTCAACTTCCTTTCCAATGCCTgcgaaaaagatgaaaaaggaTAATATTCCAGGAAATTCTAGTGAGACATTTGATTGTAAATTGTGCGCAAAGACATTCGATTCGAAAAGATCTTACAGTGAACACATGTTTTTCATGCACGATGCTATTTTCGATGATTCGGTCGTCTCTGATTTATTGAAACCCATTTCACGCACGAGAAAAACGAAAGTCATTGAAACGACTGAGAATGCATACATTGATAGTTCTACAAACTTTTCTCATGAAGCTCTCCCAATGGATTTTCCTAAAGAAGAATGCCATCCAAGTCCCGAAAAGATGGAGAGAAATTCAACAGTTGAAGACACCGAGACAAGGACTTGCAACCAATGTGGTGAACGTTATCTACAAGTCACTTCTTACTTTCAACATCGATACGACGTTCATGGCGACGATTCGTTGGTTCACGTCTGTGATAATTGCAACAAGGTATTGATAACAGTAAACATGGTTAATTCACATTTGTGCACATTAGTCAACGATTTTTTCTGCAATGATTGCGGATTGAGGTTCACCAGTGGTTTGGGACTGAAAGAACACAACATGTTGACGCATTTCGAAACTATTGGTCCGCACATATGTCACGACTGTAAAAAGTGCTTCCTAACGAACAGGATGCTGGAAAAACATAGGCGCATGATTCACCCAGATAATTATATCATTTCTCTAAAGGAAGAAAGATCTGATGAGTTGAATCTATCAGCAAAAGTGACAGAttacaaaattgaaagtgCAGTGAATGAATGTATTGAAAGTACCGTGACAGAAAATATTGAGAGTACCGtggatgaaaatattaaaagtattaaagaaGATTCTGAAAAGTTGTTGCAAAGAGTTGTGAGTCCAGTGAAAGTAATGactaaaaagggaaaaatcgACAGTCTGACTTGTCCTATTTGCGGAAAGGTTTATCAAAACACAAAGCGGTTAAAAGCTCATTTGATAATAACCCATTGCAAGGCGACCGACGCGTGCCTCCTTTGTGACAGAATGTTTGCTTTTGGCAGAGGAGTAAGACACATTCTAGACTTCCATATAACTCCTACAGATAAAAGcaaggaaaatgaattttcctGGGAAGGCGATCCGAGACAAGACGTGAAAGAAGCTATAGAAGTCTTAGGTCAGAGAAGATTGGAAGCGATTTGCTATTACGATGATTACGCTACGCTAACGGACTCTGTATCATTCCAGTGCCGGGTTTGCATGGCGACATATTCTGCTGTTCGGTATTACAGAAATCATTACATACAACGTCATGATAAATTTTGTGCACTTTGTGGACAGAGCTTTGAGAACAACGAGGCCTTTAGAACACATGTGGAAGGGGTTCACAATTCCCTGAAACATTACTTATGGTTCGCGGAAACTATTATTTCAACGATCTTACAAACCGAAAGAAGCAAAGGTAACGCGGAAACTTTTACACAAGTTATCAAGAGGAAATTGGACGAAAATGAAGTAAGCGCAGCTTCGCAGTTGCTGGAACAGATGGAAGACGAGAGAATTGCTGCgaattctactttttcttgCCATTTGCCTGAAGAAACTAATGAAGTGTCTGTTGTGACGAGTGAATTGCCCGTTTCAATAAGCGAGCCTTCTACGGAATCATATAGAGAGGATATTTTAGAATGGCCGGAATTTTCCATGGAGTTAGAAGTTACTGACAATGGGACGGTTGACACTCAGAATCCTCATTATTGCAACAATGAGATATTTGTTAAGAATGATGAGAACAAGGAATGCACGCAGGGGGATAACGATAATATGAAAACAAATGACTCGGCGATGTGTGAGAGATCTTTCGATATGCCAAACTGTATTTTCGAAAACGCGATAAGTTTGGATGATAAGTCTGTAGTTGATTTAAAAGAGAATGAATTGTTGACTGTAATTGCCGGCTGCTCTGCAGATAATCAGATGTCATTATGA
- Protein Sequence
- MKKNSKYINHAKEDNEKALEKVSLPTRKLLSSLEDNPKVLFVKLNFIGKNSSENGSAYKTRNKSVKVLSSSEVEKKAIQDVELMYKTVQKMISSSGKLITSEIIPSETINVKNNLVSCKNCKVTFSRKIELINHISSNHPEISLHSCNFCDKKFLMLRGLNQHMIKSHAINKKEIKSKNSKETITSPFKTHLDGKEIINDDWTYSAYLTDLNNSLPVDNISQEEANADLNESSLNSNPSIYSLTNSSNSTDSFQRGTNIDSASLSLNGRKKFDVPVISSMHMKNQRSVNKEEDSKFRVNAILPPDHEKVPFKPESDFVFSSNNNLELEDESQKRVSFNKYEEQEMMPSSSQNEVLSLKICCSCLEIMHVMKKIFVKQEYSKFKSHKCPFCGVYYADNYFEHHVAEAHIICNEEECRSRFILTECQSRKLFMQIKMECIHFNCKHNSHKNKLKHQECDTTNKIESDQVKVFSIKVEPSIKQENSLENSESLLLDNGSSNTEENRVSSSNCCIYETSEKCFDESEAKVESSEPSLFCYFCKETFHQEQKLLSHLYNYHRFTHPFTCHICFLCYRFIKELQAHMQTHEREILEEKPSLSVKENGLKHEKEEPLDESTQHPQYLESKAQDLQYLESEPQNLQCLESEVDFQLESEVQDLQLESEVQDLQLESNLRQDFHVPEELNFLEFNAKDSLEESNKSISDASTIDYNPAEVKVPYDDAVIKHEEKDSPKKKRPKISCVVEKVEYPLDIHNLYAFIRKTEETTPEVKTVEVEIQNPSTESKDLLSLEANADLNTSPKKTQVKRMSTSFPMPAKKMKKDNIPGNSSETFDCKLCAKTFDSKRSYSEHMFFMHDAIFDDSVVSDLLKPISRTRKTKVIETTENAYIDSSTNFSHEALPMDFPKEECHPSPEKMERNSTVEDTETRTCNQCGERYLQVTSYFQHRYDVHGDDSLVHVCDNCNKVLITVNMVNSHLCTLVNDFFCNDCGLRFTSGLGLKEHNMLTHFETIGPHICHDCKKCFLTNRMLEKHRRMIHPDNYIISLKEERSDELNLSAKVTDYKIESAVNECIESTVTENIESTVDENIKSIKEDSEKLLQRVVSPVKVMTKKGKIDSLTCPICGKVYQNTKRLKAHLIITHCKATDACLLCDRMFAFGRGVRHILDFHITPTDKSKENEFSWEGDPRQDVKEAIEVLGQRRLEAICYYDDYATLTDSVSFQCRVCMATYSAVRYYRNHYIQRHDKFCALCGQSFENNEAFRTHVEGVHNSLKHYLWFAETIISTILQTERSKGNAETFTQVIKRKLDENEVSAASQLLEQMEDERIAANSTFSCHLPEETNEVSVVTSELPVSISEPSTESYREDILEWPEFSMELEVTDNGTVDTQNPHYCNNEIFVKNDENKECTQGDNDNMKTNDSAMCERSFDMPNCIFENAISLDDKSVVDLKENELLTVIAGCSADNQMSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -