Basic Information

Insect: Synergus magnus
Gene Symbol: -
Assembly: GCA_032275165.1
Location: JAUESH010036256.1:1-7346[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0052 0.68 11.3 1.5 2 20 160 178 160 180 0.93

2 8 7.8e-05 0.01 17.0 2.7 1 22 188 209 188 209 0.96

3 8 8e-05 0.011 17.0 1.5 3 23 245 265 243 265 0.95

4 8 0.00024 0.031 15.5 1.7 3 21 360 378 359 379 0.95

5 8 0.11 15 7.1 0.9 2 23 387 409 386 409 0.95

6 8 4e-05 0.0053 17.9 0.5 1 20 477 496 477 498 0.94

7 8 0.001 0.13 13.5 1.8 1 21 519 539 519 540 0.94

8 8 2e-06 0.00027 22.0 0.8 1 23 548 571 548 571 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0052	0.68	11.3	1.5	2	20	160	178	160	180	0.93
2	8	7.8e-05	0.01	17.0	2.7	1	22	188	209	188	209	0.96
3	8	8e-05	0.011	17.0	1.5	3	23	245	265	243	265	0.95
4	8	0.00024	0.031	15.5	1.7	3	21	360	378	359	379	0.95
5	8	0.11	15	7.1	0.9	2	23	387	409	386	409	0.95
6	8	4e-05	0.0053	17.9	0.5	1	20	477	496	477	498	0.94
7	8	0.001	0.13	13.5	1.8	1	21	519	539	519	540	0.94
8	8	2e-06	0.00027	22.0	0.8	1	23	548	571	548	571	0.97

Sequence Information

Coding Sequence: GAGGGCACAAATTTACCACAAAGCATTCAGGAAGCAAGTGCTATGGCTAGCATAAACTTACACCCGTACATTGTTTGTACAAAAGAAGAGAATGGCACGGATGTATATTTTGTGAAAGGAGATGGTTGGCTCATCAAACCTCGTGATAACAACCCTGTAGCTGCTTTTGATTTGCTTTTCAAGGTTTATTTCACCATGAAAGTGGGCTACCCCACAGGACTTCacaatttctataattttattgagagcTACGTGTATGATTTGGGCACAAAGGCCCGTGGTGTTGTCACGTCACTACATgtgaatttaaatcaATACACAAAGTTTTGGACCATGGGCGCAGAAGCTTGTGATTTCCAGAGCATTTACAGCAGACTTCCGAATCAAGGGAACtcggaatttcaaaatcctgAAGCTGAACAACCTGTCTATATACAGCCTCATTTCGGAAAACGACGAAATCAATCGAGAAGTAATGAATGCGATAAATGTGGGCGAATTTACATGCATAAACACACTTTGGTGCGACATAAAAGTTACGAGTGTGATCAAGAGCCTCGTTTCAATTGTGGATATTGTGGCTATAAATCGAAACGCAAACATGATTTGTCAAAACATATGAAGACTTGTCGTTACAGACAGAATACGAgtcAACTTCCTTTCAGCAATGACTCGAAAGAAGAAACTAAGCCAAGAAGAGGAACAAGAAGATCACATGTAAAACCTCTTGCTTGTTCGTActgcaagaaaaattttacttataaAGTGTCCTTTACTAAACATCTAGAAGAACACAATAGATTAACTCGGAAAggcaaaattttgaatgtaaaaGGTGGAAAAAGGTCTTCAAACACTCTGGACATCATCGGTATTATGAAGAAAGAGAATATTGAAGTTGACGatttctttgttgaaaaacCTTCGCCTAAAACTTTGAAACTCGAAGCAATTAAtcaaaagtttgaaataaacCCCTGCTCTGTAAAACTAGAGAATGTCATGAATACCATGAAAATGACTCagatgaagaaatcgaaaacGCCGGAACTGAAGAAGaaatatgaagaaaataattgcgAAAAATGTGGACGCAATTTTACTAATCAGCGTTCCCTGAATTATCACAAGCGTTTTTTGTGCggatttgaattaaaatcatgTCGTTCTTGTTGGTATAAAACCAATCGCGAAGATAAATTGATGGATCACGTCAAAACTGCccatttgaaatttaaggaggatttctttaaaaacattattaaaaAACGGAGTTATAGTTCATCAAATTGGACAGTAGCGACTCTTCCATCAACATCCAGAGGTTTTCAAGAAAGACGTTTGCGTTCCATGACTTCATTCAATGCTTTAAATCGTTCGACTTCTTCTTTCGCCCCAATGAAAAATACTTGCTGGACTTCCCGAAAATACATCTGTTCAGATTGCGGAAGATCCTACACTTTAAAAGCTTCTTTGACTCGACACAAACAATTTGAATGTAAtgctaaaattttgaaagggaATTCTGAAATCGATGACCGAAAACCGAAAGAACACATTTgtggaaaatgtaaaagaagtTACACTTTTTTGACATCATTGTGGCGTCATCAACGATACGAATGTGGCGTTGAGCCACGTTTTATATGCCCAGTGTGCTATACTAAATTTGCACAAAAAAGTAATCTTGATCGTCACGTACGAACTCGTCATTAA
Protein Sequence: EGTNLPQSIQEASAMASINLHPYIVCTKEENGTDVYFVKGDGWLIKPRDNNPVAAFDLLFKVYFTMKVGYPTGLHNFYNFIESYVYDLGTKARGVVTSLHVNLNQYTKFWTMGAEACDFQSIYSRLPNQGNSEFQNPEAEQPVYIQPHFGKRRNQSRSNECDKCGRIYMHKHTLVRHKSYECDQEPRFNCGYCGYKSKRKHDLSKHMKTCRYRQNTSQLPFSNDSKEETKPRRGTRRSHVKPLACSYCKKNFTYKVSFTKHLEEHNRLTRKGKILNVKGGKRSSNTLDIIGIMKKENIEVDDFFVEKPSPKTLKLEAINQKFEINPCSVKLENVMNTMKMTQMKKSKTPELKKKYEENNCEKCGRNFTNQRSLNYHKRFLCGFELKSCRSCWYKTNREDKLMDHVKTAHLKFKEDFFKNIIKKRSYSSSNWTVATLPSTSRGFQERRLRSMTSFNALNRSTSSFAPMKNTCWTSRKYICSDCGRSYTLKASLTRHKQFECNAKILKGNSEIDDRKPKEHICGKCKRSYTFLTSLWRHQRYECGVEPRFICPVCYTKFAQKSNLDRHVRTRH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -