Basic Information

Insect: Synergus magnus
Gene Symbol: -
Assembly: GCA_032275165.1
Location: JAUESH010000008.1:9651284-9655365[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.05 6.6 8.2 5.6 1 23 15 37 15 37 0.97

2 11 4.7e-05 0.0062 17.7 1.3 1 23 43 65 43 65 0.96

3 11 0.00079 0.1 13.9 3.1 1 23 71 93 71 93 0.97

4 11 2.3 3e+02 3.0 0.2 1 12 100 111 100 114 0.80

5 11 0.00014 0.019 16.2 2.7 3 23 173 193 173 193 0.99

6 11 0.00056 0.074 14.3 0.9 1 23 210 232 210 232 0.98

7 11 9e-06 0.0012 20.0 1.2 1 23 242 264 242 264 0.96

8 11 1.7e-07 2.2e-05 25.4 0.3 1 23 271 293 271 293 0.99

9 11 0.00022 0.028 15.6 0.8 1 23 299 321 299 321 0.98

10 11 0.00019 0.025 15.8 4.3 1 23 332 354 332 354 0.99

11 11 0.0022 0.29 12.5 6.0 1 23 360 382 360 382 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.05	6.6	8.2	5.6	1	23	15	37	15	37	0.97
2	11	4.7e-05	0.0062	17.7	1.3	1	23	43	65	43	65	0.96
3	11	0.00079	0.1	13.9	3.1	1	23	71	93	71	93	0.97
4	11	2.3	3e+02	3.0	0.2	1	12	100	111	100	114	0.80
5	11	0.00014	0.019	16.2	2.7	3	23	173	193	173	193	0.99
6	11	0.00056	0.074	14.3	0.9	1	23	210	232	210	232	0.98
7	11	9e-06	0.0012	20.0	1.2	1	23	242	264	242	264	0.96
8	11	1.7e-07	2.2e-05	25.4	0.3	1	23	271	293	271	293	0.99
9	11	0.00022	0.028	15.6	0.8	1	23	299	321	299	321	0.98
10	11	0.00019	0.025	15.8	4.3	1	23	332	354	332	354	0.99
11	11	0.0022	0.29	12.5	6.0	1	23	360	382	360	382	0.98

Sequence Information

Coding Sequence: ATGTTGAAGCGCCACCTGCGAGGACATTCAGAGGTTGAGCCCTTTGCATGTAAATTTTGTCATCATCGTTTTCTCAGAAGGAGGGAATTAACTCAACACTTGCTCGTCCACAGTAATATGAAACCTTATGATTGTAATAAATGCCGCCAAAGCTTTGAAAGACCATCACAACTGGAAATGCACAAAAGCAACCACTGTAAAGGAAAGCTTTTTGAGTGCGacatttgtaagaaaaaatttatttcgcaTCATTGGATTAGACAGCACATAGTTTCTCACATCGGAGATGGCGGAGTTCACAAGTGTGAAGTTTGTGGAttTGCATCAAATAATCTAGATTACGCATGGGAAGGCGTCGTAATCAAATCTGAGCCTCCTGAACCTTCTGAGCATGATTCAGTTGATCAAACCAATTTTAAAGAGGAAAAGGATAAGCTAACAAATCTTCCTAGTAAAGTGAAAGAAGGCACGTCTACTTTAAAATTGACTTCAGCAAAGCAACAAAGGGTGAACTGGTGTCATGAAtgtcaaaaagaattcaaatctCTGAAAGGCCTGAATATCCACTTAAAGAGTCATGCTAATAGAAATGCTGCAAATAAAGGTAAAAACCCTAAAGATAAACTTTTCTATTGCGAAATCTGCAAGGCCAGTTATCAAACGCAAATGAAGCTTCTAAAACACGTTAAAGTGCATGCTAAAGTGCGCTTAAGACACAAGCGTTTCGAGTGCGATTATTGTAAGAAAACTTTCACAAACCGTCAGAGTATGAAATTGCACATAGCTGCTCACATGGCAGGTGGTGGACCGTATAAGTGCACAATTTGTGCAAAAGCTTTTGTCAGGTCCTACAGTTTGAAGGCACACATGTTGGTTCACGAAAACAAAAAACCCTTTGTTTGTGACGTTTGTAACAAAGCTTTCCTGAGGATGTCCTActtaaataatcataaaaagatCCATTTAAATGATAGGCCCCATgcTGACAGACCCTTTCAATGCGACGTCTGTCAAAAAACGTTTACTTGTGCAAGTAAGCTCAAAGTTCACAAGCGTAGTCACACTGGAGTCAAGCCCTTCGAGTGCGAGTTCTGTcgaagaaaattcaagtacGAACATAGTTTTAAAGCTCACAAAATGACACATGACAATCCTGACAATGTACAACCTGACAAGTCTCCAACATTCGAGACAAATTTCGAAGATACAATGTTTCGCACGGTTTATTTGAATAGCTATCATAGTGGTAAATATCCAAGAAATACTTCTGAACAGACTGTGGTTGAAGTTATACCAATCACTGTACAGAACATTGATCTTAGGAGTGAAGTGCAAAAAAATGCGGGAAGCACTACGTGTCTTGAAAAAACTATTGAACCTGAAAactctaatttaatttctgtGAAAAACGAACTTAGTGATAGAATAAGTTCCACTTGCGAAATAGACGTTGAAGATGTCAAAGTAGAACTTAACGACGATgaagttaaatttaatgaaagatAG
Protein Sequence: MLKRHLRGHSEVEPFACKFCHHRFLRRRELTQHLLVHSNMKPYDCNKCRQSFERPSQLEMHKSNHCKGKLFECDICKKKFISHHWIRQHIVSHIGDGGVHKCEVCGFASNNLDYAWEGVVIKSEPPEPSEHDSVDQTNFKEEKDKLTNLPSKVKEGTSTLKLTSAKQQRVNWCHECQKEFKSLKGLNIHLKSHANRNAANKGKNPKDKLFYCEICKASYQTQMKLLKHVKVHAKVRLRHKRFECDYCKKTFTNRQSMKLHIAAHMAGGGPYKCTICAKAFVRSYSLKAHMLVHENKKPFVCDVCNKAFLRMSYLNNHKKIHLNDRPHADRPFQCDVCQKTFTCASKLKVHKRSHTGVKPFECEFCRRKFKYEHSFKAHKMTHDNPDNVQPDKSPTFETNFEDTMFRTVYLNSYHSGKYPRNTSEQTVVEVIPITVQNIDLRSEVQKNAGSTTCLEKTIEPENSNLISVKNELSDRISSTCEIDVEDVKVELNDDEVKFNER

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -