Smag015877.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synergus magnus
Gene Symbol
-
Assembly
GCA_032275165.1
Location
JAUESH010000043.1:17640402-17644408[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.11 15 7.1 0.8 1 23 268 290 268 290 0.93
2 12 0.00033 0.043 15.1 3.5 1 23 295 317 295 318 0.95
3 12 0.00022 0.028 15.6 1.1 2 23 327 348 326 348 0.97
4 12 0.0005 0.065 14.5 6.6 1 23 444 466 444 466 0.98
5 12 0.0016 0.21 12.9 1.1 1 22 471 492 471 495 0.90
6 12 1.2e-05 0.0016 19.6 0.5 1 23 533 556 533 556 0.94
7 12 6.7e-07 8.9e-05 23.5 0.6 1 23 588 610 588 610 0.99
8 12 0.00018 0.023 15.9 4.0 1 23 624 646 624 646 0.96
9 12 0.0006 0.079 14.2 6.7 1 23 652 674 652 674 0.98
10 12 0.00026 0.034 15.4 1.4 1 23 680 702 680 702 0.98
11 12 0.0001 0.013 16.6 6.6 1 23 708 730 708 730 0.97
12 12 0.00023 0.03 15.5 0.3 1 21 736 756 736 757 0.93

Sequence Information

Coding Sequence
ATGGATGATATGGAAATTGAGAACGAATCTATGTATTTGCTGCAAAATGCAGATCAAATTTGTCGGTTGTGCCTAGACTTGAATGAAAGTAACCAATGCATTTTTCCTGCAAGCGACTCTGACTCCGAAAACACAAACGGCTTAGATTTGGTTAAGAAATTAATCGTCCAAGGTGGTATCGAGATTGTAGAAGATGATGGTCTTCCATCTAGCATCTGTCTAACATGCCTTTCAAAAGTTAATGCAGCTCATGAATTTAGAGAGCAATGCCAAATAGCAGATAGAACCCTGAGAAGAGCCTATGGAAAGCCTCAGAAACATTTTAACTTAGACTCATCAGTATCACAAAAAGATCAGTCATCACAAACGGAaggcaaaattttattattcgttAAGGACGAAGAAGAGGAAGTCGAAAAGTCTAATTCTGCAGAAGATGATCAGTCCAACagtaattcaaaaacaaatgaTGAAATAGTCATCAAATGCCATTCTCCTTTTAATCCTGAATTAAATAGTAATGAGGCATTTGTTACTAACGAGTCATCGAGCAAAGATGACACTTCTCagttggaaaaagaaaatgccCCATTCAAAAGAGAAGGTTGTAAAACTAGAAAAATGTCTATGTTCAAGAGAGTGACTTCTATGGAAaacttaaaaagtttcaaggaaaGACAGAGGAAGTACATTAAGAAAAACACAAATTCGAAGTCTGAATCAAGTGAAATGGAGTTGCCTGTAGGAACAAGGATGCGAAGTGCTATTCAAAGATTAAACAACGAAGAATCGGAATCACGTTATGAGTGCATCACATGTAAGAGCACTTTTTCCACTAAGCGAGCTTTGGGCAAACACTCATTGATTCATGACGACAAAAAGTTCAAGTGTGAAAAGTGTGACAAGGAATTCTTCAGGCTTGACCAACTGTCCGAACATTCCAAGTTGCATCACTCGAAAGAAAAAACTAAACCCgTACGCTGTAAAATTTGtgagaagaatttcaaaaaaacagaTACGATGGTGAGACATTTAAACGTTCACAAGAGAGCGAATCCTAAAGAAGTATTTTCCATCCTGAAGGAAATCAGGGATAGAAGAAAAATGGAGAATTCTGTTGAAGCTGTTGAAGAAAATGAGCAGTTTATAAATAACGAATTAAATGCTGAGGAATCTGAAACATCATCAAAACAAGCGGACAATATTTGCACTAAGGAACTCAGAAAACGTGTGACAGATTCTCAACCCAAGCAAGATAACCGAACCGATATTTTCAATTCGGattatgatagtgaaaatgaATCCGATTCCGTAAATGATATGTCGCTATTTCGTTGTAAACATTGCATAAAGTGTTACACGACCGaaaaatctttgcaaaggcACATGCTGATACACGATGAAAAGAAATTCGTTTGCAATGTCTGCAATATGAAGTTCTTCAGACCGGATAGACTGAAAAGTCATAGAGACAGATATGGACACAACGAGGACAAAGTTTCTGAACTCGAAAAACCTCCAGATGACAAGTCTGCCAtaaaactaattaatagtTGGATAAGAGAAGAGCTAGACTCTGACAATGAGGGCAAGGGTTTCCCGTGTGATCTTTGCGGAAAATCCTATGTTACCAAGAAGTCCTTAGCTAAACATCGAACAAACGCACACCAGTCTCAGGAAGACTTTTGCAAAAGTTGTGGGACTGAATGCGTCTGCGACGATAAACCCAAAGTTCAGGTAAAAGAAGAGAAAGGTAAAATCTACACATGCGATGAGTGCggtaaatcatttgaaaaagagatCAAATTGCAAAAGCACTTAAGAATCCACAATCGCGCTAAAGAACAGCAGGATACAAACTTCAAGAGATTCCTTTGCCACATCTGTAGCAAAACTTTCAGACAAAATACAGGACTGATGTTCCATATGAGAACGCACACAGGTTACAAACCGCATGTTTGTAAACATTGTGGTCGTGGATTTACTTCCAATTCTAATTGTATTAACCACGAAAGAACGCATACTGGAGATAGACCCTTCGTTTGCCAATATTGTAGCGCCGCTTTTGCTAAGTCTTGCACTTTAAAAGCACACATCACAACGCATACCGGAGAGGCGAATTACCATTGCAAAACGTGTGGTAAATCTTTCAGAAGGTTGAAGTACTTGAAGGAACATAAGTTCACGCACACTGGCGAAAAACCTTACGCTTGTAAGATCTGTGGTACTGCTTATAGCCACTCAGGTAGTTTATTCGTAcatgagaaaaaatgtaaagctCAGTATAACAGTTTCCAGTCCGCTTCCTCTCAAAACGCACAGAACTTTTGCCAGTCACAGACCAATGTTGTGACATCTCCTATCCTCTCGTCTTTAATGACATTACCTACGACTCATCATATGGGGAATATGAACAATTCCTTGGGTGCGCAagctaataaaaattatatggaGAGTGTTCAGAGAATGAATGCTCATGCTGCTGCGGCAGCTGCAGTTGGAAATGCAGGATCGCATGGTCACGCGAATACAGATGTATCTGATGTGGCATCTGCAGTGAGGAATTTCGCTATAATTGGACAAATGTTCCATTAG
Protein Sequence
MDDMEIENESMYLLQNADQICRLCLDLNESNQCIFPASDSDSENTNGLDLVKKLIVQGGIEIVEDDGLPSSICLTCLSKVNAAHEFREQCQIADRTLRRAYGKPQKHFNLDSSVSQKDQSSQTEGKILLFVKDEEEEVEKSNSAEDDQSNSNSKTNDEIVIKCHSPFNPELNSNEAFVTNESSSKDDTSQLEKENAPFKREGCKTRKMSMFKRVTSMENLKSFKERQRKYIKKNTNSKSESSEMELPVGTRMRSAIQRLNNEESESRYECITCKSTFSTKRALGKHSLIHDDKKFKCEKCDKEFFRLDQLSEHSKLHHSKEKTKPVRCKICEKNFKKTDTMVRHLNVHKRANPKEVFSILKEIRDRRKMENSVEAVEENEQFINNELNAEESETSSKQADNICTKELRKRVTDSQPKQDNRTDIFNSDYDSENESDSVNDMSLFRCKHCIKCYTTEKSLQRHMLIHDEKKFVCNVCNMKFFRPDRLKSHRDRYGHNEDKVSELEKPPDDKSAIKLINSWIREELDSDNEGKGFPCDLCGKSYVTKKSLAKHRTNAHQSQEDFCKSCGTECVCDDKPKVQVKEEKGKIYTCDECGKSFEKEIKLQKHLRIHNRAKEQQDTNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKHCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHKFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNSFQSASSQNAQNFCQSQTNVVTSPILSSLMTLPTTHHMGNMNNSLGAQANKNYMESVQRMNAHAAAAAAVGNAGSHGHANTDVSDVASAVRNFAIIGQMFH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01390545;
90% Identity
iTF_01394579;
80% Identity
-